Your message dated Sat, 28 Nov 2009 06:02:12 +0000
with message-id <e1negno-0006jg...@ries.debian.org>
and subject line Bug#533995: fixed in libtfbs-perl 0.5.svn.20091128-1
has caused the Debian Bug report #533995,
regarding libtfbs-perl: FTBFS: tests failed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
533995: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=533995
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libtfbs-perl
Version: 0.5.svn.20080722-2
Severity: serious
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20090620 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[2]: Entering directory
> `/build/user-libtfbs-perl_0.5.svn.20080722-2-amd64-AqQlqC/libtfbs-perl-0.5.svn.20080722/Ext'
> make[2]: Leaving directory
> `/build/user-libtfbs-perl_0.5.svn.20080722-2-amd64-AqQlqC/libtfbs-perl-0.5.svn.20080722/Ext'
> PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
> "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/01_Matrix..............ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/02_Search..............ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/03_DB_FlatFileDir......ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> Can't call method "name" on an undefined value at t/04_DB_TRANSFAC.t line 16.
> t/04_DB_TRANSFAC.........dubious
> Test returned status 111 (wstat 28416, 0x6f00)
> DIED. FAILED tests 1-4
> Failed 4/4 tests, 0.00% okay
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/05_DB_JASPAR...........ok
> 2/2 skipped: various reasons
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/06_SimplePFM...........ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/07_AnnSpec.............ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/07_Elph................ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/07_Gibbs...............ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/07_MEME................ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/08_DB_LocalTRANSFAC....ok
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/09_DB_SQL_mysql........ok
> 2/2 skipped: various reasons
> Name "PDL::SHARE" used only once: possible typo at
> /usr/lib/perl/5.10/DynaLoader.pm line 219, <DATA> line 206.
> t/09_Word_Consensus......ok
> Failed Test Stat Wstat Total Fail List of Failed
> -------------------------------------------------------------------------------
> t/04_DB_TRANSFAC.t 111 28416 4 8 1-4
> 4 subtests skipped.
> Failed 1/13 test scripts. 4/47 subtests failed.
> Files=13, Tests=47, 20 wallclock secs ( 3.82 cusr + 0.46 csys = 4.28 CPU)
> Failed 1/13 test programs. 4/47 subtests failed.
> make[1]: *** [test_dynamic] Error 255
The full build log is available from:
http://people.debian.org/~lucas/logs/2009/06/20/libtfbs-perl_0.5.svn.20080722-2_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: libtfbs-perl
Source-Version: 0.5.svn.20091128-1
We believe that the bug you reported is fixed in the latest version of
libtfbs-perl, which is due to be installed in the Debian FTP archive:
libtfbs-perl_0.5.svn.20091128-1.diff.gz
to main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20091128-1.diff.gz
libtfbs-perl_0.5.svn.20091128-1.dsc
to main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20091128-1.dsc
libtfbs-perl_0.5.svn.20091128-1_amd64.deb
to main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20091128-1_amd64.deb
libtfbs-perl_0.5.svn.20091128.orig.tar.gz
to main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20091128.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 533...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated libtfbs-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 28 Nov 2009 14:14:36 +0900
Source: libtfbs-perl
Binary: libtfbs-perl
Architecture: source amd64
Version: 0.5.svn.20091128-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Closes: 533995
Changes:
libtfbs-perl (0.5.svn.20091128-1) unstable; urgency=low
.
* New upstream SVN snapshot, adding JASPAR5 support.
* Skip test that needs a network connection unless in maintainer mode.
(debian/rules). Thanks to Gregor Herrmann (Closes: #533995).
* Updated to Policy 3.8.3:
- Incremented Standards-Version (debian/control)
- Dropped version in build dependency on Perl (debian/control).
- Honor the ‘nocheck’ build option (debian/rules).
* Documented how this package is tested in debian/README.Debian.
* Added meta-information in debian/upstream-metadata.yaml.
* Refreshed debian/copyright to latest experimentations on the format.
* Debhelper 7: use dh_prep and dh binary-arch in debian/rules.
Checksums-Sha1:
0fcb28f5d9333dc0ba8c19f491431cf6f9c347b1 1462
libtfbs-perl_0.5.svn.20091128-1.dsc
c812236c87cf8815ea6ea132ca3fd7eedc9ed792 144323
libtfbs-perl_0.5.svn.20091128.orig.tar.gz
086197e76941293cecb841828651cffe6ecf286b 3843
libtfbs-perl_0.5.svn.20091128-1.diff.gz
7e803f91a129464c3d4678739ac2d63480967457 199620
libtfbs-perl_0.5.svn.20091128-1_amd64.deb
Checksums-Sha256:
8d0636877095aabef8e0741c8348fcc1b68475e926a8f561900acb81e63665a5 1462
libtfbs-perl_0.5.svn.20091128-1.dsc
f26a8ba5eca93a0fb4eb4b59b36faaa033dc307dacb798862566f90dd711646b 144323
libtfbs-perl_0.5.svn.20091128.orig.tar.gz
d7d857748c4c5bae68f85a400d2532b08305002849359fa4d136106b762ea65e 3843
libtfbs-perl_0.5.svn.20091128-1.diff.gz
3b5a0ad781dcaa5b3ba0985547866459b2fd6331100e25d68c0d71e8d69d363a 199620
libtfbs-perl_0.5.svn.20091128-1_amd64.deb
Files:
61cc9993e8b958514a716cde60103fd7 1462 perl optional
libtfbs-perl_0.5.svn.20091128-1.dsc
4d5bc0609614999650eb6fb7d611f1cc 144323 perl optional
libtfbs-perl_0.5.svn.20091128.orig.tar.gz
41d889a1b872b5a9c51e32c90c83ba6e 3843 perl optional
libtfbs-perl_0.5.svn.20091128-1.diff.gz
7058a10389956eafc4733eb188270946 199620 perl optional
libtfbs-perl_0.5.svn.20091128-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)
iEYEARECAAYFAksQu/wACgkQdYl1krr+x/LQxwCfaCsTq4zDDfL9l8LHUQ/WP2bK
BYQAn2JrEJu5Nf0WC/hF/dUiTNjTyCMV
=kJ/U
-----END PGP SIGNATURE-----
--- End Message ---
