Package: libxray-absorption-perl
Version: 2.0.1-2
Severity: serious
User: debian-p...@lists.debian.org
Usertags: perl-5.10.1-transition
This package fails to build with newer versions of Test::Harness,
including the current version of libtest-harness-perl (3.17-1) and the
version bundled with Perl 5.10.1 (currently in experimental).
Test Summary Report
-------------------
t/shaltout.t (Wstat: 0 Tests: 11 Failed: 0)
Parse errors: Tests out of sequence. Found (0) but expected (1)
Files=6, Tests=76, 1 wallclock secs ( 0.05 usr 0.01 sys + 0.71 cusr 0.12
csys = 0.89 CPU)
Result: FAIL
Build log attached.
--
Niko Tyni nt...@debian.org
I: Using pkgname logfile
Current time: Fri Sep 11 17:49:40 EEST 2009
pbuilder-time-stamp: 1252680580
Obtaining the cached apt archive contents
Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder and should
Depends: debhelper (>= 7), perl (>= 5.8.8), libchemistry-elements-perl,
libmath-spline-perl, libstorable-perl, libstatistics-descriptive-perl,
libreadonly-perl
dpkg-deb: building package `pbuilder-satisfydepends-dummy' in
`/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Reading package lists...
Building dependency tree...
Reading state information...
aptitude is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Selecting previously deselected package pbuilder-satisfydepends-dummy.
(Reading database ... 10824 files and directories currently installed.)
Unpacking pbuilder-satisfydepends-dummy (from
.../pbuilder-satisfydepends-dummy.deb) ...
dpkg: dependency problems prevent configuration of
pbuilder-satisfydepends-dummy:
pbuilder-satisfydepends-dummy depends on debhelper (>= 7); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on libchemistry-elements-perl; however:
Package libchemistry-elements-perl is not installed.
pbuilder-satisfydepends-dummy depends on libmath-spline-perl; however:
Package libmath-spline-perl is not installed.
pbuilder-satisfydepends-dummy depends on libstatistics-descriptive-perl;
however:
Package libstatistics-descriptive-perl is not installed.
pbuilder-satisfydepends-dummy depends on libreadonly-perl; however:
Package libreadonly-perl is not installed.
dpkg: error processing pbuilder-satisfydepends-dummy (--install):
dependency problems - leaving unconfigured
Errors were encountered while processing:
pbuilder-satisfydepends-dummy
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
The following NEW packages will be installed:
bsdmainutils{a} debhelper{a} file{a} gettext{a} gettext-base{a}
groff-base{a} html2text{a} intltool-debian{a}
libchemistry-elements-perl{a} libcroco3{a} libglib2.0-0{a} libmagic1{a}
libmath-derivative-perl{a} libmath-spline-perl{a} libpcre3{a}
libreadonly-perl{a} libstatistics-descriptive-perl{a} libxml2{a}
man-db{a} po-debconf{a}
The following partially installed packages will be configured:
pbuilder-satisfydepends-dummy
0 packages upgraded, 20 newly installed, 0 to remove and 0 not upgraded.
Need to get 0B/8709kB of archives. After unpacking 26.0MB will be used.
Writing extended state information...
debconf: delaying package configuration, since apt-utils is not installed
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBMAGIC1.
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UNPACKING LIBMAGIC1 (FROM .../LIBMAGIC1_5.03-1_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE FILE.
UNPACKING FILE (FROM .../ARCHIVES/FILE_5.03-1_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE HTML2TEXT.
UNPACKING HTML2TEXT (FROM .../HTML2TEXT_1.3.2A-14_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBPCRE3.
UNPACKING LIBPCRE3 (FROM .../LIBPCRE3_7.8-2_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBGLIB2.0-0.
UNPACKING LIBGLIB2.0-0 (FROM .../LIBGLIB2.0-0_2.20.5-1_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBXML2.
UNPACKING LIBXML2 (FROM .../LIBXML2_2.7.4.DFSG-1_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBCROCO3.
UNPACKING LIBCROCO3 (FROM .../LIBCROCO3_0.6.1-2_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE GETTEXT-BASE.
UNPACKING GETTEXT-BASE (FROM .../GETTEXT-BASE_0.17-8_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE GETTEXT.
UNPACKING GETTEXT (FROM .../GETTEXT_0.17-8_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE INTLTOOL-DEBIAN.
UNPACKING INTLTOOL-DEBIAN (FROM .../INTLTOOL-DEBIAN_0.35.0+20060710.1_ALL.DEB)
...
SELECTING PREVIOUSLY DESELECTED PACKAGE PO-DEBCONF.
UNPACKING PO-DEBCONF (FROM .../PO-DEBCONF_1.0.16_ALL.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE GROFF-BASE.
UNPACKING GROFF-BASE (FROM .../GROFF-BASE_1.20.1-5_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE BSDMAINUTILS.
UNPACKING BSDMAINUTILS (FROM .../BSDMAINUTILS_6.1.11_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE MAN-DB.
UNPACKING MAN-DB (FROM .../MAN-DB_2.5.6-2_AMD64.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE DEBHELPER.
UNPACKING DEBHELPER (FROM .../DEBHELPER_7.4.1_ALL.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBCHEMISTRY-ELEMENTS-PERL.
UNPACKING LIBCHEMISTRY-ELEMENTS-PERL (FROM
.../LIBCHEMISTRY-ELEMENTS-PERL_1.07-2_ALL.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBMATH-DERIVATIVE-PERL.
UNPACKING LIBMATH-DERIVATIVE-PERL (FROM
.../LIBMATH-DERIVATIVE-PERL_0.01-5_ALL.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBMATH-SPLINE-PERL.
UNPACKING LIBMATH-SPLINE-PERL (FROM .../LIBMATH-SPLINE-PERL_0.01-4_ALL.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBSTATISTICS-DESCRIPTIVE-PERL.
UNPACKING LIBSTATISTICS-DESCRIPTIVE-PERL (FROM
.../LIBSTATISTICS-DESCRIPTIVE-PERL_3.0100-1_ALL.DEB) ...
SELECTING PREVIOUSLY DESELECTED PACKAGE LIBREADONLY-PERL.
UNPACKING LIBREADONLY-PERL (FROM .../LIBREADONLY-PERL_1.03-2_ALL.DEB) ...
PROCESSING TRIGGERS FOR INSTALL-INFO ...
SETTING UP LIBMAGIC1 (5.03-1) ...
SETTING UP FILE (5.03-1) ...
SETTING UP HTML2TEXT (1.3.2A-14) ...
SETTING UP LIBPCRE3 (7.8-2) ...
SETTING UP LIBGLIB2.0-0 (2.20.5-1) ...
SETTING UP LIBXML2 (2.7.4.DFSG-1) ...
SETTING UP LIBCROCO3 (0.6.1-2) ...
SETTING UP GETTEXT-BASE (0.17-8) ...
SETTING UP GETTEXT (0.17-8) ...
SETTING UP INTLTOOL-DEBIAN (0.35.0+20060710.1) ...
SETTING UP PO-DEBCONF (1.0.16) ...
SETTING UP GROFF-BASE (1.20.1-5) ...
SETTING UP BSDMAINUTILS (6.1.11) ...
UPDATE-ALTERNATIVES: USING /USR/BIN/BSD-WRITE TO PROVIDE /USR/BIN/WRITE (WRITE)
IN AUTO MODE.
SETTING UP MAN-DB (2.5.6-2) ...
BUILDING DATABASE OF MANUAL PAGES ...
SETTING UP DEBHELPER (7.4.1) ...
SETTING UP LIBCHEMISTRY-ELEMENTS-PERL (1.07-2) ...
SETTING UP LIBMATH-DERIVATIVE-PERL (0.01-5) ...
SETTING UP LIBMATH-SPLINE-PERL (0.01-4) ...
SETTING UP LIBSTATISTICS-DESCRIPTIVE-PERL (3.0100-1) ...
SETTING UP LIBREADONLY-PERL (1.03-2) ...
SETTING UP PBUILDER-SATISFYDEPENDS-DUMMY (0.INVALID.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version.
The following NEW packages will be installed:
libtest-harness-perl
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 242kB of archives.
After this operation, 811kB of additional disk space will be used.
Get:1 http://ftp.fi.debian.org sid/main libtest-harness-perl 3.17-1 [242kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 242kB in 0s (616kB/s)
Selecting previously deselected package libtest-harness-perl.
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(Reading database ... 12048 files and directories currently installed.)
Unpacking libtest-harness-perl (from .../libtest-harness-perl_3.17-1_all.deb)
...
Adding `diversion of /usr/bin/prove to /usr/bin/prove.diverted by
libtest-harness-perl'
Processing triggers for man-db ...
Setting up libtest-harness-perl (3.17-1) ...
Copying back the cached apt archive contents
-> new cache content libtest-harness-perl_3.17-1_all.deb added
Copying source file
-> copying [/home/niko/libxray-absorption-perl_2.0.1-2.dsc]
-> copying [/home/niko/libxray-absorption-perl_2.0.1.orig.tar.gz]
-> copying [/home/niko/libxray-absorption-perl_2.0.1-2.diff.gz]
Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Mar 7 21:32:16 2009 UTC using DSA key ID 93701EEF
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on
./libxray-absorption-perl_2.0.1-2.dsc
dpkg-source: info: extracting libxray-absorption-perl in
libxray-absorption-perl-2.0.1
dpkg-source: info: unpacking libxray-absorption-perl_2.0.1.orig.tar.gz
dpkg-source: info: applying libxray-absorption-perl_2.0.1-2.diff.gz
-> Building the package
dpkg-buildpackage: set CFLAGS to default value: -g -O2
dpkg-buildpackage: set CPPFLAGS to default value:
dpkg-buildpackage: set LDFLAGS to default value:
dpkg-buildpackage: set FFLAGS to default value: -g -O2
dpkg-buildpackage: set CXXFLAGS to default value: -g -O2
dpkg-buildpackage: source package libxray-absorption-perl
dpkg-buildpackage: source version 2.0.1-2
dpkg-buildpackage: source changed by Carlo Segre <se...@debian.org>
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh_testdir
dh_testroot
dh_clean build-stamp install-stamp
# Clean up all directories and the Build script
[ ! -f Build ] || ./Build realclean
dpkg-source -b libxray-absorption-perl-2.0.1
dpkg-source: info: using source format `1.0'
dpkg-source: info: building libxray-absorption-perl using existing
libxray-absorption-perl_2.0.1.orig.tar.gz
dpkg-source: info: building libxray-absorption-perl in
libxray-absorption-perl_2.0.1-2.diff.gz
dpkg-source: info: building libxray-absorption-perl in
libxray-absorption-perl_2.0.1-2.dsc
debian/rules build
dh_testdir
# Generate the Build script and run it
/usr/bin/perl Build.PL
destdir=/tmp/buildd/libxray-absorption-perl-2.0.1/debian/libxray-absorption-perl
WARNING: the following files are missing in your kit:
data/xcom/ATWTS.DAT
data/xcom/ENB.DAT
data/xcom/HASH1.DAT
data/xcom/HASH2.DAT
data/xcom/INDEX.DAT
data/xcom/MDATX3.001
data/xcom/MDATX3.002
data/xcom/MDATX3.003
data/xcom/MDATX3.004
data/xcom/MDATX3.005
data/xcom/MDATX3.006
data/xcom/MDATX3.007
data/xcom/MDATX3.008
data/xcom/MDATX3.009
data/xcom/MDATX3.010
data/xcom/MDATX3.011
data/xcom/MDATX3.012
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data/xcom/MDATX3.017
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data/xcom/MDATX3.019
data/xcom/MDATX3.020
data/xcom/MDATX3.021
data/xcom/MDATX3.022
data/xcom/MDATX3.023
data/xcom/MDATX3.024
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data/xcom/MDATX3.026
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data/xcom/MDATX3.028
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data/xcom/MDATX3.030
data/xcom/MDATX3.031
data/xcom/MDATX3.032
data/xcom/MDATX3.033
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data/xcom/MDATX3.035
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data/xcom/MDATX3.037
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data/xcom/MDATX3.048
data/xcom/MDATX3.049
data/xcom/MDATX3.050
data/xcom/MDATX3.051
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data/xcom/MDATX3.063
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data/xcom/MDATX3.065
data/xcom/MDATX3.066
data/xcom/MDATX3.067
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data/xcom/MDATX3.069
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data/xcom/MDATX3.088
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data/xcom/MDATX3.090
data/xcom/MDATX3.091
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data/xcom/MDATX3.093
data/xcom/MDATX3.094
data/xcom/MDATX3.095
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data/xcom/MDATX3.097
data/xcom/MDATX3.098
data/xcom/MDATX3.099
data/xcom/MDATX3.100
data/xcom/Readme.txt
data/xcom/XCOM.f
META.yml
README
Please inform the author.
Checking whether your kit is complete...
Checking prerequisites...
Looks good
Creating new 'Build' script for 'Xray-Absorption' version '2.0.1'
./Build build
/usr/bin/perl data/henke2st.PL data/henke.db
Henke data conversion tool 1.5 for Absorption 0.10
Parsing energies ... lines ...
Parsing element 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90
Getting energy list keys ... sorting energy list ... and making energy hash
Saving new database, data/henke.db.
/usr/bin/perl data/chantler2st.PL data/chantler.db
Chantler data conversion tool 1.2 for Absorption 0.10
Parsing lines ...
Parsing element 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90
Getting energy list keys ... sorting energy list ... and making energy hash
Saving new database, data/chantler.db.
/usr/bin/perl data/elam2st.PL data/elam.db
Elam data conversion tool 1.4 for Absorption 0.10
Parsing element 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95
Getting energy list keys ... sorting energy list ... and making energy hash
Getting line list keys ... sorting line list ... and making lines hash
Saving new database, data/elam.db.
/usr/bin/perl data/shalt2st.PL data/shaltout.db
Shaltout data conversion tool 0.1 for Absorption 0.10
Reading element 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90
Parsing lines file
Saving new database, data/shaltout.db.
/usr/bin/perl data/dat2st.PL data/mcmaster.db
McMaster data conversion tool 1.1 for Absorption 0.10
Reading element 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90
Saving new database, data/mcmaster.db.
/usr/bin/perl data/cl2st.PL data/cl.db
CL data conversion tool 1.3 for Absorption 0.10
Parsing lines ... energies ...
Getting energy list keys ... sorting energy list ... and making energy hash
Saving new database, data/cl.db.
/usr/bin/perl data/hubbell_g2st.PL data/hubbell_g.db
Hubbell data conversion tool 0.2.0 for Xray::Absorption
Parsing element 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90
Saving new database, data/hubbell_g.db.
Copying lib/Xray/Absorption/Chantler.pm -> blib/lib/Xray/Absorption/Chantler.pm
Copying lib/Xray/Absorption.pm -> blib/lib/Xray/Absorption.pm
Copying lib/Xray/FluorescenceEXAFS.pm -> blib/lib/Xray/FluorescenceEXAFS.pm
Copying lib/Xray/Absorption/McMaster.pm -> blib/lib/Xray/Absorption/McMaster.pm
Copying lib/Xray/Absorption/Elam.pm -> blib/lib/Xray/Absorption/Elam.pm
Copying lib/Xray/Absorption/None.pm -> blib/lib/Xray/Absorption/None.pm
Copying lib/Xray/Absorption/Henke.pm -> blib/lib/Xray/Absorption/Henke.pm
Copying lib/Xray/Absorption/CL.pm -> blib/lib/Xray/Absorption/CL.pm
Copying lib/Xray/Absorption/Shaltout.pm -> blib/lib/Xray/Absorption/Shaltout.pm
Copying data/cl.db -> blib/lib/Xray/Absorption/cl.db
Copying data/mcmaster.db -> blib/lib/Xray/Absorption/mcmaster.db
Copying data/henke.db -> blib/lib/Xray/Absorption/henke.db
Copying data/shaltout.db -> blib/lib/Xray/Absorption/shaltout.db
Copying data/hubbell_g.db -> blib/lib/Xray/Absorption/hubbell_g.db
Copying data/elam.db -> blib/lib/Xray/Absorption/elam.db
Copying data/chantler.db -> blib/lib/Xray/Absorption/chantler.db
Manifying blib/lib/Xray/Absorption/Chantler.pm ->
blib/libdoc/Xray::Absorption::Chantler.3pm
Manifying blib/lib/Xray/Absorption/Elam.pm ->
blib/libdoc/Xray::Absorption::Elam.3pm
Manifying blib/lib/Xray/Absorption/CL.pm -> blib/libdoc/Xray::Absorption::CL.3pm
Manifying blib/lib/Xray/Absorption/Henke.pm ->
blib/libdoc/Xray::Absorption::Henke.3pm
Manifying blib/lib/Xray/Absorption/McMaster.pm ->
blib/libdoc/Xray::Absorption::McMaster.3pm
Manifying blib/lib/Xray/Absorption/None.pm ->
blib/libdoc/Xray::Absorption::None.3pm
Manifying blib/lib/Xray/Absorption.pm -> blib/libdoc/Xray::Absorption.3pm
Manifying blib/lib/Xray/FluorescenceEXAFS.pm ->
blib/libdoc/Xray::FluorescenceEXAFS.3pm
Manifying blib/lib/Xray/Absorption/Shaltout.pm ->
blib/libdoc/Xray::Absorption::Shaltout.3pm
./Build test
t/chantler.t .. ok
t/elam.t ...... ok
t/fluo.t ...... ok
t/henke.t ..... ok
t/mcmaster.t .. ok
t/shaltout.t ..
All 11 subtests passed
Test Summary Report
-------------------
t/shaltout.t (Wstat: 0 Tests: 11 Failed: 0)
Parse errors: Tests out of sequence. Found (0) but expected (1)
Files=6, Tests=76, 1 wallclock secs ( 0.05 usr 0.01 sys + 0.71 cusr 0.12
csys = 0.89 CPU)
Result: FAIL
Failed 1/6 test programs. 0/76 subtests failed.
make: *** [build-stamp] Error 255
dpkg-buildpackage: error: debian/rules build gave error exit status 2
pbuilder: Failed autobuilding of package
-> Aborting with an error
-> unmounting dev/pts filesystem
-> unmounting proc filesystem
