Your message dated Thu, 16 Jul 2009 23:02:18 +0000
with message-id <e1mrzxy-00083k...@ries.debian.org>
and subject line Bug#537102: fixed in openbabel 2.2.2-2
has caused the Debian Bug report #537102,
regarding openbabel: tr1/memory detection broken: ./configure: line XXXX:
tr1/memory: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
537102: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=537102
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gnome-chemistry-utils
Version: 0.10.5-1
Severity: serious
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20090713 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> /bin/sh ../../libtool --tag=CC --mode=link gcc -Wall -g -O2 -version-info
> 10:5:10 -Wl,--as-needed -Wl,-O1 -o libgcpcanvas-0.10.la -rpath /usr/lib
> gprintable.lo pango-layout-to-svg.lo gcp-canvas-group.lo gcp-canvas-line.lo
> gcp-canvas-pango.lo gcp-canvas-shape.lo gcp-canvas-bpath.lo
> gcp-canvas-rect-ellipse.lo gcp-canvas-polygon.lo -lgnomecanvas-2 -lart_lgpl_2
> -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm
> -lpangocairo-1.0 -lgio-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig
> -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lxml2
> libtool: link: gcc -shared .libs/gprintable.o .libs/pango-layout-to-svg.o
> .libs/gcp-canvas-group.o .libs/gcp-canvas-line.o .libs/gcp-canvas-pango.o
> .libs/gcp-canvas-shape.o .libs/gcp-canvas-bpath.o
> .libs/gcp-canvas-rect-ellipse.o .libs/gcp-canvas-polygon.o
> /usr/lib/libgnomecanvas-2.so /usr/lib/libart_lgpl_2.so
> /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so
> /usr/lib/libpangoft2-1.0.so /usr/lib/libgdk_pixbuf-2.0.so -lm
> /usr/lib/libpangocairo-1.0.so /usr/lib/libgio-2.0.so /usr/lib/libcairo.so
> /usr/lib/libpango-1.0.so /usr/lib/libfreetype.so -lfontconfig
> /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so /usr/lib/libglib-2.0.so
> /usr/lib/libxml2.so -Wl,--as-needed -Wl,-O1 -Wl,-soname
> -Wl,libgcpcanvas-0.10.so.0 -o .libs/libgcpcanvas-0.10.so.0.10.5
> libtool: link: (cd ".libs" && rm -f "libgcpcanvas-0.10.so.0" && ln -s
> "libgcpcanvas-0.10.so.0.10.5" "libgcpcanvas-0.10.so.0")
> libtool: link: (cd ".libs" && rm -f "libgcpcanvas-0.10.so" && ln -s
> "libgcpcanvas-0.10.so.0.10.5" "libgcpcanvas-0.10.so")
> libtool: link: ( cd ".libs" && rm -f "libgcpcanvas-0.10.la" && ln -s
> "../libgcpcanvas-0.10.la" "libgcpcanvas-0.10.la" )
> make[4]: Leaving directory
> `/build/user-gnome-chemistry-utils_0.10.5-1-amd64-Lx4rX1/gnome-chemistry-utils-0.10.5/libs/canvas'
> Making all in gcp
> make[4]: Entering directory
> `/build/user-gnome-chemistry-utils_0.10.5-1-amd64-Lx4rX1/gnome-chemistry-utils-0.10.5/libs/gcp'
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT application.lo -MD -MP
> -MF .deps/application.Tpo -c -o application.lo application.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT plugin.lo -MD -MP -MF
> .deps/plugin.Tpo -c -o plugin.lo plugin.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT settings.lo -MD -MP
> -MF .deps/settings.Tpo -c -o settings.lo settings.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT document.lo -MD -MP
> -MF .deps/document.Tpo -c -o document.lo document.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT target.lo -MD -MP -MF
> .deps/target.Tpo -c -o target.lo target.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT window.lo -MD -MP -MF
> .deps/window.Tpo -c -o window.lo window.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT operation.lo -MD -MP
> -MF .deps/operation.Tpo -c -o operation.lo operation.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT arrow.lo -MD -MP -MF
> .deps/arrow.Tpo -c -o arrow.lo arrow.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT atom.lo -MD -MP -MF
> .deps/atom.Tpo -c -o atom.lo atom.cc
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT electron.lo -MD -MP
> -MF .deps/electron.Tpo -c -o electron.lo electron.cc
> mv -f .deps/settings.Tpo .deps/settings.Plo
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT bond.lo -MD -MP -MF
> .deps/bond.Tpo -c -o bond.lo bond.cc
> In file included from application.cc:61:
> /usr/include/openbabel-2.0/openbabel/reaction.h:26:34: error:
> boost/shared_ptr.hpp: No such file or directory
> mv -f .deps/operation.Tpo .deps/operation.Plo
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT residue.lo -MD -MP -MF
> .deps/residue.Tpo -c -o residue.lo residue.cc
> mv -f .deps/plugin.Tpo .deps/plugin.Plo
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT fragment-atom.lo -MD
> -MP -MF .deps/fragment-atom.Tpo -c -o fragment-atom.lo fragment-atom.cc
> mv -f .deps/arrow.Tpo .deps/arrow.Plo
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT fragment-residue.lo
> -MD -MP -MF .deps/fragment-residue.Tpo -c -o fragment-residue.lo
> fragment-residue.cc
> mv -f .deps/target.Tpo .deps/target.Plo
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT fragment.lo -MD -MP
> -MF .deps/fragment.Tpo -c -o fragment.lo fragment.cc
> mv -f .deps/electron.Tpo .deps/electron.Plo
> In file included from application.cc:61:
> /usr/include/openbabel-2.0/openbabel/reaction.h:46: error: 'boost' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h:46: error: template argument
> 1 is invalid
> /usr/include/openbabel-2.0/openbabel/reaction.h:46: error: template argument
> 2 is invalid
> /usr/include/openbabel-2.0/openbabel/reaction.h:47: error: 'boost' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h:47: error: template argument
> 1 is invalid
> /usr/include/openbabel-2.0/openbabel/reaction.h:47: error: template argument
> 2 is invalid
> /usr/include/openbabel-2.0/openbabel/reaction.h:48: error: 'boost' has not
> been declared
> /usr/include/openbabel-2.0/openbabel/reaction.h:48: error: ISO C++ forbids
> declaration of 'shared_ptr' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:48: error: expected ';'
> before '<' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:49: error: 'boost' has not
> been declared
> /usr/include/openbabel-2.0/openbabel/reaction.h:49: error: ISO C++ forbids
> declaration of 'shared_ptr' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:49: error: expected ';'
> before '<' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:63: error: expected ',' or
> '...' before '::' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:63: error: ISO C++ forbids
> declaration of 'boost' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:66: error: expected ',' or
> '...' before '::' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:66: error: ISO C++ forbids
> declaration of 'boost' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:69: error: expected ',' or
> '...' before '::' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:69: error: ISO C++ forbids
> declaration of 'boost' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:72: error: expected ',' or
> '...' before '::' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:72: error: ISO C++ forbids
> declaration of 'boost' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:75: error: 'boost' has not
> been declared
> /usr/include/openbabel-2.0/openbabel/reaction.h:75: error: ISO C++ forbids
> declaration of 'shared_ptr' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:75: error: expected ';'
> before '<' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:82: error: expected `;'
> before 'boost'
> /usr/include/openbabel-2.0/openbabel/reaction.h:82: error: 'boost' has not
> been declared
> /usr/include/openbabel-2.0/openbabel/reaction.h:82: error: ISO C++ forbids
> declaration of 'shared_ptr' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:82: error: expected ';'
> before '<' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:90: error: expected `;'
> before 'boost'
> /usr/include/openbabel-2.0/openbabel/reaction.h:90: error: 'boost' has not
> been declared
> /usr/include/openbabel-2.0/openbabel/reaction.h:90: error: ISO C++ forbids
> declaration of 'shared_ptr' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:90: error: expected ';'
> before '<' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:93: error: expected `;'
> before 'boost'
> /usr/include/openbabel-2.0/openbabel/reaction.h:93: error: 'boost' has not
> been declared
> /usr/include/openbabel-2.0/openbabel/reaction.h:93: error: ISO C++ forbids
> declaration of 'shared_ptr' with no type
> /usr/include/openbabel-2.0/openbabel/reaction.h:93: error: expected ';'
> before '<' token
> /usr/include/openbabel-2.0/openbabel/reaction.h:96: error: expected `;'
> before 'std'
> /usr/include/openbabel-2.0/openbabel/reaction.h: In member function 'int
> OpenBabel::OBReaction::NumReactants() const':
> /usr/include/openbabel-2.0/openbabel/reaction.h:58: error: request for member
> 'size' in '((const
> OpenBabel::OBReaction*)this)->OpenBabel::OBReaction::_reactants', which is of
> non-class type 'const int'
> /usr/include/openbabel-2.0/openbabel/reaction.h: In member function 'int
> OpenBabel::OBReaction::NumProducts() const':
> /usr/include/openbabel-2.0/openbabel/reaction.h:61: error: request for member
> 'size' in '((const
> OpenBabel::OBReaction*)this)->OpenBabel::OBReaction::_products', which is of
> non-class type 'const int'
> /usr/include/openbabel-2.0/openbabel/reaction.h: In member function 'void
> OpenBabel::OBReaction::AddReactant(int)':
> /usr/include/openbabel-2.0/openbabel/reaction.h:64: error: request for member
> 'push_back' in
> '((OpenBabel::OBReaction*)this)->OpenBabel::OBReaction::_reactants', which is
> of non-class type 'int'
> /usr/include/openbabel-2.0/openbabel/reaction.h:64: error: 'sp' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h: In member function 'void
> OpenBabel::OBReaction::AddProduct(int)':
> /usr/include/openbabel-2.0/openbabel/reaction.h:67: error: request for member
> 'push_back' in
> '((OpenBabel::OBReaction*)this)->OpenBabel::OBReaction::_products', which is
> of non-class type 'int'
> /usr/include/openbabel-2.0/openbabel/reaction.h:67: error: 'sp' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h: In member function 'void
> OpenBabel::OBReaction::SetTransitionState(int)':
> /usr/include/openbabel-2.0/openbabel/reaction.h:70: error: '_ts' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h:70: error: 'sp' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h: In member function 'void
> OpenBabel::OBReaction::AddAgent(int)':
> /usr/include/openbabel-2.0/openbabel/reaction.h:73: error: '_agent' was not
> declared in this scope
> /usr/include/openbabel-2.0/openbabel/reaction.h:73: error: 'sp' was not
> declared in this scope
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT molecule.lo -MD -MP
> -MF .deps/molecule.Tpo -c -o molecule.lo molecule.cc
> mv -f .deps/window.Tpo .deps/window.Plo
> ../../doltcompile g++ -DHAVE_CONFIG_H -DDATADIR=\"/usr/share\"
> -DPKGDATADIR=\"/usr/share/gchemutils/0.10\"
> -DGLADEDIR=\"/usr/share/gchemutils/0.10/glade/paint\"
> -DPLUGINSDIR=\"/usr/lib/gchemutils/0.10/plugins/paint\"
> -DPIXMAPSDIR=\"/usr/share/gchemutils/0.10/pixmaps\"
> -DLOCALEDIR=\"/usr/share/locale\" -I. -I../.. -I../.. -I../../libs
> -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0
> -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2
> -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo
> -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12
> -D_REENTRANT -DORBIT2=1 -pthread -I/usr/include/libgoffice-0.8
> -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libgsf-1
> -I/usr/include/libxml2 -I/usr/include/gtk-2.0 -I/usr/include/libglade-2.0
> -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gconf/2
> -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pixman-1
> -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12
> -I/usr/include/orbit-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include
> -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include
> -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0
> -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2
> -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0
> -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0
> -I/usr/include/openbabel-2.0 -Wall -Wall -g -O2 -MT reaction.lo -MD -MP
> -MF .deps/reaction.Tpo -c -o reaction.lo reaction.cc
> make[4]: *** [application.lo] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2009/07/13/gnome-chemistry-utils_0.10.5-1_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: openbabel
Source-Version: 2.2.2-2
We believe that the bug you reported is fixed in the latest version of
openbabel, which is due to be installed in the Debian FTP archive:
libopenbabel-dev_2.2.2-2_i386.deb
to pool/main/o/openbabel/libopenbabel-dev_2.2.2-2_i386.deb
libopenbabel3_2.2.2-2_i386.deb
to pool/main/o/openbabel/libopenbabel3_2.2.2-2_i386.deb
openbabel_2.2.2-2.diff.gz
to pool/main/o/openbabel/openbabel_2.2.2-2.diff.gz
openbabel_2.2.2-2.dsc
to pool/main/o/openbabel/openbabel_2.2.2-2.dsc
openbabel_2.2.2-2_i386.deb
to pool/main/o/openbabel/openbabel_2.2.2-2_i386.deb
python-openbabel_2.2.2-2_i386.deb
to pool/main/o/openbabel/python-openbabel_2.2.2-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 537...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Daniel Leidert (dale) <daniel.leid...@wgdd.de> (supplier of updated openbabel
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 17 Jul 2009 00:18:06 +0200
Source: openbabel
Binary: openbabel libopenbabel-dev libopenbabel3 python-openbabel
Architecture: source i386
Version: 2.2.2-2
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Daniel Leidert (dale) <daniel.leid...@wgdd.de>
Description:
libopenbabel-dev - Chemical toolbox library (development files)
libopenbabel3 - Chemical toolbox library
openbabel - Chemical toolbox utilities
python-openbabel - Chemical toolbox library (python bindings)
Closes: 537102
Changes:
openbabel (2.2.2-2) unstable; urgency=low
.
* debian/control (Uploaders): Removed LI Daobing. Thanks for your work!
(Standards-Version): Bumped to 3.8.2.
(Vcs-Svn): Fixed vcs-field-uses-not-recommended-uri-format.
* debian/patches/537102_fix_tr1_memory_detection.patch: Added.
- configure.in, configure, src/config.h.in: Fix detection of tr1/memory to
prevent building the package with boost (closes: #537102).
Checksums-Sha1:
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b91563919f6f80229cdd78894dc547c8ef6945ee 8184 openbabel_2.2.2-2.diff.gz
d3b25c5584579774ae0fdf02120eca1cd3d533a8 234262 openbabel_2.2.2-2_i386.deb
84488949e5059fa2a8188062c37909fb93ae84b7 253334
libopenbabel-dev_2.2.2-2_i386.deb
20c0b4ea4cbce6f5673a9d5bba774f53b2e3db8b 2920466 libopenbabel3_2.2.2-2_i386.deb
1a3f4013363fa758243d0f7bd6a38e1d6de67dd1 1214238
python-openbabel_2.2.2-2_i386.deb
Checksums-Sha256:
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openbabel_2.2.2-2.dsc
d1ad7d24298c81b71e8ee89fd19b77aec5ca5ed77f134056bf07d280033d92a4 8184
openbabel_2.2.2-2.diff.gz
a42299405261596737503fc28b3f4d6b12b10df4f5c53bf07fe74c8adb080ed1 234262
openbabel_2.2.2-2_i386.deb
2e9ee4365beb625d5889d59666ed8931bcd39831d98f6543073624f3afc7d40d 253334
libopenbabel-dev_2.2.2-2_i386.deb
ac25c9b555f1f027e7fe8aa0659fa709d4c2b047ffcfdf8305cba5d00681d48a 2920466
libopenbabel3_2.2.2-2_i386.deb
e3e25ab7805c4d2365a98b3428f473313207fc4ad315fdc9a41c3c0e0cd8bd06 1214238
python-openbabel_2.2.2-2_i386.deb
Files:
530f42d5e886e19e6998127d6ac39d46 1390 science optional openbabel_2.2.2-2.dsc
192004f732ae37e68051cb565072aa6e 8184 science optional
openbabel_2.2.2-2.diff.gz
818f07d7dc4c16dd941f061322286dfa 234262 science optional
openbabel_2.2.2-2_i386.deb
543cf8af9d3b1a6d87912960c61f3fb7 253334 libdevel optional
libopenbabel-dev_2.2.2-2_i386.deb
8cb39e5e3f26f4e4e8b33cf6e8c77dba 2920466 libs optional
libopenbabel3_2.2.2-2_i386.deb
58e4c2720ba53aed2ca1eb5b17ecd990 1214238 python optional
python-openbabel_2.2.2-2_i386.deb
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--- End Message ---
