Hi Lucas,
On 21 June 2009 at 16:55, Lucas Nussbaum wrote:
| Hi,
|
| During a rebuild of all packages in sid, your package failed to build on
| amd64.
|
| Relevant part:
| > /usr/bin/fakeroot debian/rules binary
| > test -x debian/rules
| > dh_clean -k
| > dh_installdirs -A
| > mkdir -p "."
| > if test -e /usr/share/misc/config.guess ; then \
| > for i in ./jri/tools/config.guess ; do \
| > if ! test -e $i.cdbs-orig ; then \
| > mv $i $i.cdbs-orig ; \
| > cp --remove-destination
/usr/share/misc/config.guess $i ; \
| > fi ; \
| > done ; \
| > fi
| > if test -e /usr/share/misc/config.sub ; then \
| > for i in ./jri/tools/config.sub ; do \
| > if ! test -e $i.cdbs-orig ; then \
| > mv $i $i.cdbs-orig ; \
| > cp --remove-destination
/usr/share/misc/config.sub $i ; \
| > fi ; \
| > done ; \
| > fi
| > dh_installdirs usr/lib/R/site-library
| > if test -f /usr/bin/xvfb-run; then \
| > xvfb-run \
| > R CMD INSTALL -l
/build/user-rjava_0.6-3-1-amd64-l63FQQ/rjava-0.6-3/debian/r-cran-rjava/usr/lib/R/site-library
--clean \
| > . ; \
| > else \
| > R CMD INSTALL -l
/build/user-rjava_0.6-3-1-amd64-l63FQQ/rjava-0.6-3/debian/r-cran-rjava/usr/lib/R/site-library
\
| > --clean . ;\
| > fi
| > * Installing *source* package 'rJava' ...
| > checking for gcc... gcc -std=gnu99
| > checking for C compiler default output file name... a.out
| > checking whether the C compiler works... yes
| > checking whether we are cross compiling... no
| > checking for suffix of executables...
| > checking for suffix of object files... o
| > checking whether we are using the GNU C compiler... yes
| > checking whether gcc -std=gnu99 accepts -g... yes
| > checking for gcc -std=gnu99 option to accept ISO C89... none needed
| > checking how to run the C preprocessor... gcc -std=gnu99 -E
| > checking for grep that handles long lines and -e... /bin/grep
| > checking for egrep... /bin/grep -E
| > checking for ANSI C header files... yes
| > checking for sys/wait.h that is POSIX.1 compatible... yes
| > checking for sys/types.h... yes
| > checking for sys/stat.h... yes
| > checking for stdlib.h... yes
| > checking for string.h... yes
| > checking for memory.h... yes
| > checking for strings.h... yes
| > checking for inttypes.h... yes
| > checking for stdint.h... yes
| > checking for unistd.h... yes
| > checking for string.h... (cached) yes
| > checking sys/time.h usability... yes
| > checking sys/time.h presence... yes
| > checking for sys/time.h... yes
| > checking for unistd.h... (cached) yes
| > checking for an ANSI C-conforming const... yes
| > checking whether time.h and sys/time.h may both be included... yes
| > configure: checking whether gcc -std=gnu99 supports static inline...
| > yes
| > configure: error: One or more Java configuration variables are not set.
| > Make sure R is configured with full Java support (including JDK). Run
| > R CMD javareconf
| > as root to add Java support to R.
| >
| > If you don't have root privileges, run
| > R CMD javareconf -e
| > to set all Java-related variables and then install rJava.
| >
| > checking Java support in R... present:
| > interpreter : '/usr/bin/java'
| > archiver : '/usr/bin/jar'
| > compiler : '/usr/bin/javac'
| > header prep.: ''
| > cpp flags : '-I/usr/lib/jvm/java-6-openjdk/jre/../include'
| > java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server
-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64
-L/usr/lib/jvm/java-6-openjdk/jre/../lib/amd64 -L
-L/usr/java/packages/lib/amd64 -L/usr/lib/jni -L/lib -L/usr/lib -ljvm'
| > ERROR: configuration failed for package 'rJava'
| > * Removing
'/build/user-rjava_0.6-3-1-amd64-l63FQQ/rjava-0.6-3/debian/r-cran-rjava/usr/lib/R/site-library/rJava'
| > make: *** [R_any_arch] Error 1
That config should have been done 'right' by r-base-core so I need to check
that.
Thanks for the bugreport. I'll try to square that away.
Dirk
| The full build log is available from:
|
http://people.debian.org/~lucas/logs/2009/06/20/rjava_0.6-3-1_lsid64.buildlog
|
| A list of current common problems and possible solutions is available at
| http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
|
| About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
| of the Grid'5000 platform, using a clean chroot. Internet was not
| accessible from the build systems.
|
| --
| | Lucas Nussbaum
| | lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| | jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
|
|
--
Three out of two people have difficulties with fractions.
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