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and subject line Bug#303865: fixed in polyxmass-bin 0.8.8-1
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To: Debian Bug Tracking System <[EMAIL PROTECTED]>
From: Andreas Jochens <[EMAIL PROTECTED]>
Subject: polyxmass-bin: FTBFS (amd64/gcc-4.0): duplicate 'unsigned'
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Date: Sat, 09 Apr 2005 10:46:15 +0200
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Package: polyxmass-bin
Version: 0.8.7-1
Severity: normal
Tags: patch

When building 'polyxmass-bin' on amd64/unstable with gcc-4.0,
I get the following error:

x86_64-linux-gcc -c -DLOCALEDIR=\"/usr/share/locale\" 
-DLOCALE_ALIAS_PATH=\"/usr/share/locale\" -DLIBDIR=\"/usr/lib\" -DIN_LIBINTL 
-DENABLE_RELOCATABLE=1 -DIN_LIBRARY -DINSTALLDIR=\"/usr/lib\" -DNO_XMALLOC 
-Dset_relocation_prefix=libintl_set_relocation_prefix 
-Drelocate=libintl_relocate -DDEPENDS_ON_LIBICONV=1 -DHAVE_CONFIG_H -I. -I. 
-I..  -g -Wall -Werror -D_REENTRANT -O2  loadmsgcat.c
In file included from /usr/include/inttypes.h:28,
                 from loadmsgcat.c:84:
/usr/include/stdint.h:136: error: duplicate 'unsigned'
/usr/include/stdint.h:136: error: 'long long long' is too long for GCC
make[3]: *** [loadmsgcat.o] Error 1
make[3]: Leaving directory `/polyxmass-bin-0.8.7/intl'


This is due to the use of '-Werror' which makes the configure check
for 'uintmax_t' fail because of an 'unused variable' warning.

There are also a lot of warnings which prevent compilation with gcc-4.0,
e.g. 

cc1: warnings being treated as errors
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_setup':
polyxedit-ui-seqed-wnd.c:76: warning: passing argument 4 of 'g_assert_warning' 
discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:79: warning: passing argument 4 of 'g_assert_warning' 
discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:128: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:143: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:151: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:159: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:175: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:183: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:198: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:228: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:241: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:247: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:253: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:289: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:320: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:410: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:473: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_render_polseq':
polyxedit-ui-seqed-wnd.c:615: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:618: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 
'polyxedit_seqed_wnd_update_LR_end_modif_state':
polyxedit-ui-seqed-wnd.c:691: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:694: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:708: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:731: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 
'polyxedit_seqed_wnd_render_polseq_monicons':
polyxedit-ui-seqed-wnd.c:786: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:790: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:793: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:841: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 
'polyxedit_seqed_wnd_set_polymer_modified':
polyxedit-ui-seqed-wnd.c:936: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:939: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 
'polyxedit_seqed_wnd_ensure_region_visible':
polyxedit-ui-seqed-wnd.c:977: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:980: warning: passing argument 4 of 
'g_assert_warning'discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 
'polyxedit_seqed_wnd_ensure_select_cursor_visible':
polyxedit-ui-seqed-wnd.c:1082: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:1092: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_redraw_sequence':
polyxedit-ui-seqed-wnd.c:1241: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:1243: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:1266: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_draw_cursor':
polyxedit-ui-seqed-wnd.c:1443: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_draw_sel_polygon':
polyxedit-ui-seqed-wnd.c:1510: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_update_sel_polygon':
polyxedit-ui-seqed-wnd.c:1788: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_setup_monomer_flag':
polyxedit-ui-seqed-wnd.c:2052: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:2063: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_update_monomer_flag':
polyxedit-ui-seqed-wnd.c:2170: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:2173: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:2218: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:2229: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 
'polyxedit_seqed_wnd_monicon_get_pixel_coord':
polyxedit-ui-seqed-wnd.c:2493: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:2495: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c:2496: warning: passing argument 4 of 
'g_assert_warning' discards qualifiers from pointer target type
polyxedit-ui-seqed-wnd.c: In function 'polyxedit_seqed_wnd_get_mnm_idx_with_xy':
polyxedit-ui-seqed-wnd.c:2647: warn
[...]

Please remove '-Werror' from CFLAGS in debian/rules until these warnings
have been fixed.

Regards
Andreas Jochens

diff -urN ../tmp-orig/polyxmass-bin-0.8.7/debian/rules ./debian/rules
--- ../tmp-orig/polyxmass-bin-0.8.7/debian/rules        2005-04-09 
10:34:05.049632414 +0200
+++ ./debian/rules      2005-04-09 10:33:08.758681446 +0200
@@ -6,7 +6,7 @@
 DEB_BUILD_GNU_TYPE  ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
 
 
-CFLAGS = -g -Wall -Werror -D_REENTRANT
+CFLAGS = -g -Wall -D_REENTRANT
 
 ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
        CFLAGS += -O0

---------------------------------------
Received: (at 303865-close) by bugs.debian.org; 28 Jul 2005 09:33:04 +0000
>From [EMAIL PROTECTED] Thu Jul 28 02:33:03 2005
Return-path: <[EMAIL PROTECTED]>
Received: from katie by spohr.debian.org with local (Exim 3.36 1 (Debian))
        id 1Dy3r7-0003NF-00; Thu, 28 Jul 2005 01:35:05 -0700
From: Filippo Rusconi <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
X-Katie: $Revision: 1.56 $
Subject: Bug#303865: fixed in polyxmass-bin 0.8.8-1
Message-Id: <[EMAIL PROTECTED]>
Sender: Archive Administrator <[EMAIL PROTECTED]>
Date: Thu, 28 Jul 2005 01:35:05 -0700
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        (1.212-2003-09-23-exp) on spohr.debian.org
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        autolearn=no version=2.60-bugs.debian.org_2005_01_02

Source: polyxmass-bin
Source-Version: 0.8.8-1

We believe that the bug you reported is fixed in the latest version of
polyxmass-bin, which is due to be installed in the Debian FTP archive:

polyxmass-bin_0.8.8-1.diff.gz
  to pool/main/p/polyxmass-bin/polyxmass-bin_0.8.8-1.diff.gz
polyxmass-bin_0.8.8-1.dsc
  to pool/main/p/polyxmass-bin/polyxmass-bin_0.8.8-1.dsc
polyxmass-bin_0.8.8-1_sparc.deb
  to pool/main/p/polyxmass-bin/polyxmass-bin_0.8.8-1_sparc.deb
polyxmass-bin_0.8.8.orig.tar.gz
  to pool/main/p/polyxmass-bin/polyxmass-bin_0.8.8.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Filippo Rusconi <[EMAIL PROTECTED]> (supplier of updated polyxmass-bin package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Mon, 18 Jul 2005 19:11:43 +0200
Source: polyxmass-bin
Binary: polyxmass-bin
Architecture: source sparc
Version: 0.8.8-1
Distribution: unstable
Urgency: low
Maintainer: Filippo Rusconi <[EMAIL PROTECTED]>
Changed-By: Filippo Rusconi <[EMAIL PROTECTED]>
Description: 
 polyxmass-bin - Mass spectrometry framework - GUI program
Closes: 303865
Changes: 
 polyxmass-bin (0.8.8-1) unstable; urgency=low
 .
   * First release after the switch to the gcc-4 compiler.
   * Removed the -Werror CFLAGS component from the rules file, so that the
     configure script goes on even with warnings. Thanks to Andreas Jochens
     <[EMAIL PROTECTED]> (closes: #303865).
   * Bumped one minor unit the Standards-Version: 3.6.2
   * Removed the docbook-to-man (>= 2.0.0) Build-Depends as now the man
     page is shipped pre-compiled.
   * Sponsored upload done by Lionel Elie Mamane <[EMAIL PROTECTED]>
Files: 
 95e99f3dd58adc73ca37e3c9e601aae2 743 science optional polyxmass-bin_0.8.8-1.dsc
 1971175c4273fe2aeb415ce94764a1ff 862553 science optional 
polyxmass-bin_0.8.8.orig.tar.gz
 f3235d6838fe7042e919bf54cb443a56 2582 science optional 
polyxmass-bin_0.8.8-1.diff.gz
 ae3fed473fc2334d2f5af7718d98a415 393698 science optional 
polyxmass-bin_0.8.8-1_sparc.deb

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