Your message dated Thu, 10 Apr 2008 10:17:03 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#468060: fixed in amap-align 2.2-1
has caused the Debian Bug report #468060,
regarding amap-align: FTBFS with g++-4.3: Missing includes
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
468060: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=468060
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: amap-align
Version: 2.0-3
Severity: important
User: [EMAIL PROTECTED]
Usertags: ftbfs-gcc-4.3
From my pbuilder build log, with g++ -> g++-4.3:
...
g++ -O3 -W -Wall -pedantic -DNDEBUG -DNumInsertStates=1 -DVERSION='"AMAP.2.0"'
-funroll-loops -lm -o amap Amap.cc
In file included from Amap.cc:12:
ProbabilisticModel.h: In member function 'void
ProbabilisticModel::ComputeNewParameters(Sequence*, Sequence*, const VF&, const
VF&, VF&, VF&, VF&, VVF&, VF&, bool) const':
ProbabilisticModel.h:504: warning: suggest parentheses around && within ||
Amap.cc: In function 'SafeVector<std::basic_string<char,
std::char_traits<char>, std::allocator<char> > > ParseParams(int, char**)':
Amap.cc:713: error: 'strcmp' was not declared in this scope
make[1]: *** [amap] Error 1
make[1]: Leaving directory `/tmp/buildd/amap-align-2.0'
make: *** [build-stamp] Error 2
dpkg-buildpackage: failure: debian/rules build gave error exit status 2
--
Daniel Schepler
--- End Message ---
--- Begin Message ---
Source: amap-align
Source-Version: 2.2-1
We believe that the bug you reported is fixed in the latest version of
amap-align, which is due to be installed in the Debian FTP archive:
amap-align_2.2-1.diff.gz
to pool/main/a/amap-align/amap-align_2.2-1.diff.gz
amap-align_2.2-1.dsc
to pool/main/a/amap-align/amap-align_2.2-1.dsc
amap-align_2.2-1_mips.deb
to pool/main/a/amap-align/amap-align_2.2-1_mips.deb
amap-align_2.2.orig.tar.gz
to pool/main/a/amap-align/amap-align_2.2.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[EMAIL PROTECTED]> (supplier of updated amap-align package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Thu, 10 Apr 2008 09:17:01 +0900
Source: amap-align
Binary: amap-align
Architecture: source mips
Version: 2.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Charles Plessy <[EMAIL PROTECTED]>
Description:
amap-align - Protein multiple alignment by sequence annealing
Closes: 468060
Changes:
amap-align (2.2-1) unstable; urgency=low
.
[ Charles Plessy ]
* New upstream release:
- Corrected DNA alignment parameters file. Improved debug output. (2.01)
- Includes new output for the AMAP Display Java based GUI. (2.1)
* debian/amap.1, debian/amap.1.xml: updated the manpage.
* debian/watch: changed URI to monitor.
* debian/patches, debian/rules, debian/control: switched to quilt.
* debian/patches/fix-gcc-4.3.diff: updated for version 2.2 (Closes: #468060).
* debian/control:
- Moved the 'Conflicts:' field from the source to the binary section.
Files:
2dac3cff5142957977c524b48dc0a8f7 982 science optional amap-align_2.2-1.dsc
60beb35eb96a9bad6d670b1fa68b9538 102861 science optional
amap-align_2.2.orig.tar.gz
d65cd9b07e05b2de06bc1440f41638bf 8407 science optional amap-align_2.2-1.diff.gz
79f40392ea8532a2cc2e0b2390c0bc46 159412 science optional
amap-align_2.2-1_mips.deb
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--- End Message ---
