Your message dated Tue, 18 Feb 2025 07:12:23 +0000
with message-id <c1bb588a-d65a-46b5-8035-7732e3c94...@icloud.com>
has caused the report #1097763,
regarding r-base: ftbfs with GCC-15
to be marked as having been forwarded to the upstream software
author(s)
(NB: If you are a system administrator and have no idea what this
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--
1097763: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097763
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
On 18/02/2025 01:49, Dirk Eddelbuettel via R-core wrote:
Hi R Core Team,
Debian, not unlike CRAN, also rebuilds in bulk under newer compilers. Below
is a bug report for 'r-release' under gcc 15. This reply is mostly for
bookkeeping in our BTS to record that I told you about it; I am of course
aware of the work going into r-devel for gcc 15 so this is somewhat
ceremonial.
From the NEWS for R-patched
CHANGES IN R 4.4.2 patched:
INSTALLATION:
• R can be installed using C23 (for example with -std=gnu23 or
-std=gnu2x) with recent compilers including gcc 12-14, Apple
clang 16 and LLVM clang 17-19. (LLVM clang 18 and 19 objected to
apparently valid code using attributes accepted by all the other
compilers.)
It can be installed with the upcoming (at the time of writing)
gcc 15, which defaults to C23.
gcc 15 requires a particular ordering of attributes, which I cannot find
in the C23 standard (and neither clang nor Intel requires).
R 4.4.3 has been announced for Feb 28: my bet is that will come before
GCC 15 is released.
Best, Dirk
On 17 February 2025 at 17:49, Matthias Klose wrote:
| Package: src:r-base
| Version: 4.4.2-1
| Severity: important
| Tags: sid forky
| User: debian-...@lists.debian.org
| Usertags: ftbfs-gcc-15
|
| [This bug is NOT targeted to the upcoming trixie release]
|
| Please keep this issue open in the bug tracker for the package it
| was filed for. If a fix in another package is required, please
| file a bug for the other package (or clone), and add a block in this
| package. Please keep the issue open until the package can be built in
| a follow-up test rebuild.
|
| The package fails to build in a test rebuild on at least amd64 with
| gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
| severity of this report will be raised before the forky release.
|
| The full build log can be found at:
|
http://qa-logs.debian.net/2025/02/16/amd64exp/r-base_4.4.2-1_unstable_gccexp.log.gz
| The last lines of the build log are at the end of this report.
|
| To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
| or install the gcc, g++, gfortran, ... packages from experimental.
|
| apt-get -t=experimental install g++
|
| GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
| Other Common build failures are new warnings resulting in build failures
| with -Werror turned on, or new/dropped symbols in Debian symbols files.
| For other C/C++ related build failures see the porting guide at
| http://gcc.gnu.org/gcc-15/porting_to.html
|
| [...]
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qgeom.c -o qgeom.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
rgeom.c -o rgeom.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dhyper.c -o dhyper.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
phyper.c -o phyper.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qhyper.c -o qhyper.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
rhyper.c -o rhyper.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dnbinom.c -o dnbinom.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
pnbinom.c -o pnbinom.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qnbinom.c -o qnbinom.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qnbinom_mu.c -o qnbinom_mu.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
rnbinom.c -o rnbinom.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dpois.c -o dpois.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
ppois.c -o ppois.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qpois.c -o qpois.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
rpois.c -o rpois.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dweibull.c -o dweibull.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
pweibull.c -o pweibull.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qweibull.c -o qweibull.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
rweibull.c -o rweibull.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dlogis.c -o dlogis.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
plogis.c -o plogis.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qlogis.c -o qlogis.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
rlogis.c -o rlogis.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dnchisq.c -o dnchisq.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
pnchisq.c -o pnchisq.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qnchisq.c -o qnchisq.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dnbeta.c -o dnbeta.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
pnbeta.c -o pnbeta.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qnbeta.c -o qnbeta.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
pnf.c -o pnf.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
pnt.c -o pnt.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qnf.c -o qnf.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qnt.c -o qnt.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
ptukey.c -o ptukey.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
qtukey.c -o qtukey.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
toms708.c -o toms708.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
wilcox.c -o wilcox.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
signrank.c -o signrank.o
| ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o
fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o
lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o
lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o
choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o
qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o
dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o
rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o
qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o
pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o
rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o
qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o
qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o
pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
| ranlib libnmath.a
| make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.2/src/nmath'
| make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.2/src/nmath'
| make[3]: Entering directory '/build/reproducible-path/r-base-4.4.2/src/unix'
| config.status: creating src/unix/Makefile
| making Rembedded.d from Rembedded.c
| making dynload.d from dynload.c
| making system.d from system.c
| making sys-unix.d from sys-unix.c
| making sys-std.d from sys-std.c
| making X11.d from X11.c
| make[4]: Entering directory '/build/reproducible-path/r-base-4.4.2/src/unix'
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
Rembedded.c -o Rembedded.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
dynload.c -o dynload.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
system.c -o system.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
sys-unix.c -o sys-unix.o
| gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp
-fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
sys-std.c -o sys-std.o
| sys-std.c:1189:1: warning: ‘noreturn’ attribute ignored [-Wattributes]
| 1189 | void Rstd_CleanUp(SA_TYPE saveact, int status, int runLast)
| | ^~~~
| sys-std.c:1189:1: error: expected identifier or ‘(’ before ‘void’
| make[4]: *** [../../Makeconf:129: sys-std.o] Error 1
| make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.2/src/unix'
| make[3]: *** [Makefile:49: R] Error 2
| make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.2/src/unix'
| make[2]: *** [Makefile:28: R] Error 1
| make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.2/src'
| make[1]: *** [Makefile:62: R] Error 1
| make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.2'
| make: *** [debian/rules:329: make-arch-stamp] Error 2
| dpkg-buildpackage: error: debian/rules binary subprocess returned exit status
2
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
--- End Message ---
