Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvili<a...@biotec.tu-dresden.de>
* Package name : cufflinks
Version : 1.0.2
Upstream Author : Cole Trapnell
* URL : http://cufflinks.cbcb.umd.edu
* License : BSL-1
Programming Lang: C++, Python
Description : Transcript assembly, differential expression and
regulation for RNA-Seq
Cufflinks assembles transcripts, estimates their abundances, and tests for
differential expression and regulation in RNA-Seq samples. It accepts
aligned
RNA-Seq reads and assembles the alignments into a parsimonious set of
transcripts. Cufflinks then estimates the relative abundances of these
transcripts based on how many reads support each one.
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