After reboot, CPU utilization and times looked normal. After running latencytop they are goofed up again. Attached is the output of 'ps -eo comm,c,time' after running latencytop.
Feel free to reassign this bug to the latencytop package.
COMMAND C TIME init 99 246-22:12:53 kthreadd 0 00:00:00 migration/0 0 00:00:00 ksoftirqd/0 99 246-22:12:53 watchdog/0 0 00:00:00 migration/1 0 00:00:00 ksoftirqd/1 99 246-22:12:53 watchdog/1 0 00:00:00 events/0 0 00:00:00 events/1 99 246-22:12:53 cpuset 0 00:00:00 khelper 0 00:00:00 netns 0 00:00:00 async/mgr 0 00:00:00 pm 0 00:00:00 sync_supers 99 246-22:12:53 bdi-default 0 00:00:00 kintegrityd/0 0 00:00:00 kintegrityd/1 0 00:00:00 kblockd/0 0 00:00:00 kblockd/1 0 00:00:00 kacpid 0 00:00:00 kacpi_notify 0 00:00:00 kacpi_hotplug 0 00:00:00 kseriod 0 00:00:00 kondemand/0 99 246-22:12:53 kondemand/1 99 246-22:12:53 khungtaskd 0 00:00:00 kswapd0 0 00:00:00 ksmd 0 00:00:00 aio/0 0 00:00:00 aio/1 0 00:00:00 crypto/0 0 00:00:00 crypto/1 0 00:00:00 ksuspend_usbd 0 00:00:00 khubd 0 00:00:00 ata/0 0 00:00:00 ata/1 0 00:00:00 ata_aux 0 00:00:00 scsi_eh_0 0 00:00:00 scsi_eh_1 0 00:00:00 scsi_eh_2 0 00:00:00 usb-storage 0 00:00:01 usbhid_resumer 0 00:00:00 kstriped 0 00:00:00 kjournald 0 00:00:00 flush-8:0 0 00:00:00 udevd 99 246-22:12:53 kpsmoused 0 00:00:00 i915 0 00:00:00 hd-audio0 0 00:00:00 kjournald 0 00:00:00 kjournald 0 00:00:00 kjournald 0 00:00:01 kjournald 0 00:00:00 kjournald 0 00:00:00 kjournald 0 00:00:00 kjournald 0 00:00:00 kjournald 0 00:00:00 portmap 99 246-22:12:53 rpciod/0 0 00:00:00 rpciod/1 0 00:00:00 kslowd000 0 00:00:00 kslowd001 0 00:00:00 nfsiod 0 00:00:00 rpc.idmapd 0 00:00:00 rsyslogd 0 00:00:00 acpi_fakekeyd 0 00:00:00 lockd 0 00:00:00 nfsd4 99 246-22:12:53 nfsd 0 00:00:00 nfsd 0 00:00:00 nfsd 0 00:00:00 nfsd 0 00:00:00 nfsd 0 00:00:00 nfsd 0 00:00:00 nfsd 0 00:00:00 nfsd 0 00:00:00 dbus-daemon 99 246-22:12:53 rpc.mountd 0 00:00:00 famd 0 00:00:00 acpid 99 246-22:12:53 NetworkManager 99 246-22:12:53 modem-manager 99 246-22:12:53 wpa_supplicant 99 246-22:12:53 xfs 99 246-22:12:53 apt-cacher-ng 0 00:00:00 gdm 99 246-22:12:53 gdm 99 246-22:12:53 Xorg 99 246-22:12:55 atd 0 00:00:00 atop 99 246-22:12:53 avahi-daemon 99 246-22:12:53 avahi-daemon 0 00:00:00 named 0 00:00:02 bluetoothd 0 00:00:00 bluetooth 0 00:00:00 cupsd 99 246-22:12:53 krfcommd 0 00:00:00 apache2 99 246-22:12:53 htcacheclean 99 246-22:12:53 cron 99 246-22:12:53 apache2 0 00:00:00 apache2 0 00:00:00 apache2 0 00:00:00 apache2 99 246-22:12:53 apache2 99 246-22:12:53 ddclient 99 246-22:12:53 distccd 99 246-22:12:53 distccd 0 00:00:00 kerneloops 99 246-22:12:53 inetd 99 246-22:12:53 distccd 0 00:00:00 kconservative/0 0 00:00:00 kconservative/1 0 00:00:00 ntpd 99 246-22:12:53 distccd 0 00:00:00 nmbd 99 246-22:12:53 distccd 0 00:00:00 mysqld_safe 99 246-22:12:53 smbd 99 246-22:12:53 mysqld 0 00:00:04 logger 0 00:00:00 gnome-keyring-d 0 00:00:00 console-kit-dae 99 246-22:12:53 smartd 99 246-22:12:53 smbd 0 00:00:00 x-session-manag 99 246-22:12:53 sshd 0 00:00:00 ssh-agent 99 246-22:12:53 dbus-launch 99 246-22:12:53 dbus-daemon 99 246-22:12:53 exim4 0 00:00:00 vsftpd 99 246-22:12:53 seahorse-agent 99 246-22:12:53 getty 0 00:00:00 getty 0 00:00:00 getty 0 00:00:00 getty 99 246-22:12:53 getty 0 00:00:00 getty 0 00:00:00 gvfsd 99 246-22:12:53 udevd 0 00:00:00 udevd 99 246-22:12:53 gconfd-2 99 246-22:12:53 gnome-power-man 99 246-22:12:53 gnome-settings- 99 246-22:12:53 upowerd 99 246-22:12:53 polkitd 99 246-22:12:53 metacity 99 246-22:12:54 gnome-panel 99 246-22:12:54 gvfs-gdu-volume 99 246-22:12:53 udisks-daemon 99 246-22:12:53 udisks-daemon 99 246-22:12:53 gvfs-afc-volume 0 00:00:00 nautilus 99 246-22:12:53 bonobo-activati 99 246-22:12:53 gvfs-gphoto2-vo 99 246-22:12:53 kerneloops-appl 99 246-22:12:53 sudo 99 246-22:12:53 tomboy 99 246-22:12:53 python 99 246-22:12:53 update-notifier 99 246-22:12:53 polkit-gnome-au 99 246-22:12:53 evolution-alarm 99 246-22:12:53 gdu-notificatio 99 246-22:12:53 nm-applet 99 246-22:12:53 firestarter 99 246-22:12:56 dbus-launch 0 00:00:00 dbus-daemon 99 246-22:12:53 gconfd-2 99 246-22:12:53 e-calendar-fact 99 246-22:12:53 gvfsd-trash 99 246-22:12:53 vinagre-applet 99 246-22:12:53 gweather-applet 99 246-22:12:53 mixer_applet2 99 246-22:12:53 e-addressbook-f 99 246-22:12:53 gvfsd-burn 99 246-22:12:53 python 99 246-22:12:53 python 99 246-22:12:53 gvfsd-metadata 99 246-22:12:53 firefox-bin 99 246-22:14:50 gnome-terminal 99 246-22:12:54 gnome-pty-helpe 99 246-22:12:53 bash 99 246-22:12:53 bash 99 246-22:12:53 bash 99 246-22:12:53 gcalctool 99 246-22:12:53 bash 99 246-22:12:53 bash 99 246-22:12:53 bash 99 246-22:12:53 logkim 99 246-22:12:53 ssh 99 246-22:12:53 xvnc4viewer 99 246-22:12:53 sudo 0 00:00:00 latencytop 99 246-22:12:53 bash 99 246-22:12:53 man 0 00:00:00 pager 0 00:00:00 bash 0 00:00:00 man 0 00:00:00 pager 0 00:00:00 evolution 99 246-22:12:53 ps 0 00:00:00