Running mkfs.vfat with -r should do the trick (it did for me.)

Before :
# fsck.vfat /dev/mmcblk0p1
dosfsck 3.0.9, 31 Jan 2010, FAT32, LFN
FATs differ but appear to be intact. Use which FAT ?
1) Use first FAT
2) Use second FAT
? 1
Checking for unused clusters.
Reclaimed 1 unused cluster (32768 bytes).
Checking free cluster summary.
Free cluster summary wrong (205181 vs. really 205182)
1) Correct
2) Don't correct
? 1
Leaving file system unchanged.
/dev/mmcblk0p1: 1116 files, 39234/244416 clusters


After :
# fsck.vfat -r /dev/mmcblk0p1
dosfsck 3.0.9, 31 Jan 2010, FAT32, LFN
FATs differ but appear to be intact. Use which FAT ?
1) Use first FAT
2) Use second FAT
? 1
Reclaimed 1 unused cluster (32768 bytes).
Free cluster summary wrong (205181 vs. really 205182)
1) Correct
2) Don't correct
? 1
Perform changes ? (y/n) y
/dev/mmcblk0p1: 1116 files, 39234/244416 clusters



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