There's a patch available. https://bugs.launchpad.net/ubuntu/+source/recordmydesktop/+bug/568933 http://launchpadlibrarian.net/45096637/window-select.patch
It has to be applied to
/usr/lib/pymodules/python{VERSION}/recordMyDesktop/rmdSimple.py
{VERSION} has to fit the installed Python version.
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