Dear Barry, Bio3D is distributed in its version 1.0-7 by Debian, and in one of our automated QA tests, we realised that our package will not build with the latest version of R that we distribute, the initial beta release (r51661) of R 2.11.0.
You can find below a tail of the build log, with the error that stops the build. I am not intimate with R development, so I can not tell if it is a regression in R 2.11.0, or a change to which Bio3D has to adapt. What is your impression? Best regards, -- Charles Plessy, Debian Med packaging team, Tsurumi, Kanagawa, Japan. Le Sun, Apr 11, 2010 at 10:15:57AM +0200, Lucas Nussbaum a écrit : > Source: r-other-bio3d > Version: 1.0-7-1 > Severity: serious > Tags: squeeze sid > User: debian...@lists.debian.org > Usertags: qa-ftbfs-20100410 qa-ftbfs > Justification: FTBFS on amd64 > > Hi, > > During a rebuild of all packages in sid, your package failed to build on > amd64. > > Relevant part: > > /usr/bin/fakeroot debian/rules binary > > test -x debian/rules > > dh_testroot > > dh_clean -k > > dh_installdirs -A > > mkdir -p "." > > dh_installdirs usr/lib/R/site-library > > if test -f /usr/bin/xvfb-run; then \ > > xvfb-run \ > > R CMD INSTALL -l > > /build/user-r-other-bio3d_1.0-7-1-amd64-lI2VR2/r-other-bio3d-1.0-7/debian/r-other-bio3d/usr/lib/R/site-library > > --clean \ > > . ; \ > > else \ > > R CMD INSTALL -l > > /build/user-r-other-bio3d_1.0-7-1-amd64-lI2VR2/r-other-bio3d-1.0-7/debian/r-other-bio3d/usr/lib/R/site-library > > \ > > --clean . ;\ > > fi > > * installing *source* package 'bio3d' ... > > ** R > > Error in parse(outFile) : embedded nul in string: '\0' > > ERROR: unable to collate files for package 'bio3d' > > * removing > > '/build/user-r-other-bio3d_1.0-7-1-amd64-lI2VR2/r-other-bio3d-1.0-7/debian/r-other-bio3d/usr/lib/R/site-library/bio3d' > > make: *** [R_any_arch] Error 1 > > The full build log is available from: > > http://people.debian.org/~lucas/logs/2010/04/10/r-other-bio3d_1.0-7-1_lsid64.buildlog > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > About the archive rebuild: The rebuild was done on about 50 AMD64 nodes > of the Grid'5000 platform, using a clean chroot. Internet was not > accessible from the build systems. > > -- > | Lucas Nussbaum > | lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ | > | jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F | > > > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/mailman/listinfo/debian-med-packaging -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
