Hi, [ sorry for the delay ]
On Fri, Dec 25, 2009 at 06:27:05PM -0500, Michael Hanke wrote: > Hi, > > On Thu, Dec 24, 2009 at 11:31:42AM +0100, Lucas Nussbaum wrote: > > Source: fslview > > Version: 3.1.2+4.1.4-2 > > Severity: serious > > User: [email protected] > > Usertags: qa-ftbfs-20091213 qa-ftbfs > > Justification: FTBFS on amd64 > > > > > /build/user-fslview_3.1.2+4.1.4-2-amd64-imf6Ze/fslview-3.1.2+4.1.4/src/storage/image.h:42: > > > warning: 'typedef' was ignored in this declaration > > > make[3]: *** No rule to make target `/usr/lib/openmpi/lib/libmpi_cxx.so', > > > needed by `bin/fslview'. Stop. > > > make[2]: *** [src/fslview/CMakeFiles/fslview.dir/all] Error 2make[3]: > > > Leaving directory > > > `/build/user-fslview_3.1.2+4.1.4-2-amd64-imf6Ze/fslview-3.1.2+4.1.4/obj-x86_64-linux-gnu' > > Hmmm, fslview doesn't use openmpi. Don't know why this shows up, since > the sources do not refer to any mpi-related stuff. I am somewhat > inclined to blame some package that fslview build-depends on. It seems that I was right with my assumption. Fslview links against libvtkHybrid.so that is in turn linked against 74 other libraries. Here is a list of selected items (I might have missed other important ones, or added some false positive): libmysqlclient.so.16 => /usr/lib/libmysqlclient.so.16 (0xf6547000) libavcodec.so.52 => /usr/lib/i686/cmov/libavcodec.so.52 (0xf566e000) libavformat.so.52 => /usr/lib/i686/cmov/libavformat.so.52 (0xf5573000) libavutil.so.49 => /usr/lib/i686/cmov/libavutil.so.49 (0xf5561000) libswscale.so.0 => /usr/lib/i686/cmov/libswscale.so.0 (0xf5533000) libmpi_cxx.so.0 => /usr/lib/libmpi_cxx.so.0 (0xf54ec000) libmpi.so.0 => /usr/lib/libmpi.so.0 (0xf5455000) libopen-rte.so.0 => /usr/lib/libopen-rte.so.0 (0xf5413000) libopen-pal.so.0 => /usr/lib/libopen-pal.so.0 (0xf53ac000) libdirac_encoder.so.0 => /usr/lib/libdirac_encoder.so.0 (0xf4fdc000) To be able to build fslview on sid I would need to add the following build-dependencies libopenmpi-dev libavcodec-dev libavformat-dev libswscale-dev libgl2ps-dev However, none of them is required by fslview itself, but all are pulled in by VTK. I therefore think that the 'vtki5-dev' package should depend on these instead. On the other hand, I can remove all of the -l statements for the libraries above from the link command in question and linking still works -- so apparently these libs are no really critical. Yet, there are added is deps for linking (somehow). I'm not sure you who is to blame. cmake is identical in squeeze and sid and linking works on squeeze. OTOH VTK is more advanced in sid, but the complexity of the package makes it relatively difficult to get a clue what is going on. For now, I'm going to reassign this bug to vtk, since there seems to be little that I can do in fslview to fix that properly. For reference: The only relevant link config in the CMakeLists.txt of fslview is this src/fslview/CMakeLists.txt:TARGET_LINK_LIBRARIES( fslview vtkHybrid vtkWidgets QVTK ) (there is more linking: local libs, Qt, but nothing related to the problem above) Linking is attempted with this command (this is a single command, reformated for better readability): ----------------------------------- /usr/bin/g++ -g -O2 -I/tmp/fslview-3.1.2+4.1.4/fsl/libprob -I/usr/include/newmat -I/usr/include/qwt -I/usr/include/nifti -g -Wall -O2 -Wno-deprecated -Wl,--as-needed -Wl,--no-undefined CMakeFiles/fslview.dir/main.o CMakeFiles/fslview.dir/preferences.o CMakeFiles/fslview.dir/atlas.o CMakeFiles/fslview.dir/filemanager.o CMakeFiles/fslview.dir/logger.o CMakeFiles/fslview.dir/application.o CMakeFiles/fslview.dir/assistantclient.o CMakeFiles/fslview.dir/splashscreen.o CMakeFiles/fslview.dir/version.o CMakeFiles/fslview.dir/tracker.o CMakeFiles/fslview.dir/cursor.o CMakeFiles/fslview.dir/bricon.o CMakeFiles/fslview.dir/imagegroup.o CMakeFiles/fslview.dir/overlaylist.o CMakeFiles/fslview.dir/metaimage.o CMakeFiles/fslview.dir/imagedata.o CMakeFiles/fslview.dir/drawsettings.o CMakeFiles/fslview.dir/imagedisplaysetting.o CMakeFiles/fslview.dir/lookuptable.o CMakeFiles/fslview.dir/curvedatalist.o CMakeFiles/fslview.dir/imagedatastore.o CMakeFiles/fslview.dir/imagebuffer.o CMakeFiles/fslview.dir/graphmanager.o CMakeFiles/fslview.dir/briconwidget.o CMakeFiles/fslview.dir/cursorwidget.o CMakeFiles/fslview.dir/drawwidget.o CMakeFiles/fslview.dir/imagewidget.o CMakeFiles/fslview.dir/viewwidget.o CMakeFiles/fslview.dir/orthowidget.o CMakeFiles/fslview.dir/singlewidget.o CMakeFiles/fslview.dir/lightboxwidget.o CMakeFiles/fslview.dir/slicewidget.o CMakeFiles/fslview.dir/sliceview.o CMakeFiles/fslview.dir/timeserieswidget.o CMakeFiles/fslview.dir/singleserieswidget.o CMakeFiles/fslview.dir/overlaywidget.o CMakeFiles/fslview.dir/histogramwidget.o CMakeFiles/fslview.dir/clusterbrowser.o CMakeFiles/fslview.dir/histogramtoolbar.o CMakeFiles/fslview.dir/overlayinfodialog.o CMakeFiles/fslview.dir/meshoptionsdialog.o CMakeFiles/fslview.dir/atlasoptionsdialog.o CMakeFiles/fslview.dir/atlasselectiondialog.o CMakeFiles/fslview.dir/viewoptionsdialog.o CMakeFiles/fslview.dir/histogramoptionsdialogimpl.o CMakeFiles/fslview.dir/properties.o CMakeFiles/fslview.dir/propertiesdialogimpl.o CMakeFiles/fslview.dir/vtkpropertydialog.o CMakeFiles/fslview.dir/vtktoolbar.o CMakeFiles/fslview.dir/timeseriestoolbar.o CMakeFiles/fslview.dir/talairachwidget.o CMakeFiles/fslview.dir/shape.o CMakeFiles/fslview.dir/rect.o CMakeFiles/fslview.dir/command.o CMakeFiles/fslview.dir/modelfit.o CMakeFiles/fslview.dir/clusterdata.o CMakeFiles/fslview.dir/tsplotcode.o CMakeFiles/fslview.dir/maintoolbar.o CMakeFiles/fslview.dir/modetoolbar.o CMakeFiles/fslview.dir/vtkmeshsurface.o CMakeFiles/fslview.dir/vtkwidget.o -o ../../bin/fslview -rdynamic -L/usr/lib/vtk-5.2 -L/tmp/fslview-3.1.2+4.1.4/fsl/lib -L/tmp/fslview-3.1.2+4.1.4/fsl/extras/lib -L/tmp/fslview-3.1.2+4.1.4/obj-i486-linux-gnu/lib -L/usr/lib/openmpi/lib ../../lib/libutilities.a ../../lib/libui.a ../../lib/libstorage.a -Wl,-Bstatic -lqassistantclient -Wl,-Bdynamic -lqt-mt -lSM -lICE -lX11 -lXext -ldl -lpthread ../../lib/libfslio.a -lniftiio -lznz -lz ../../lib/libmiscmaths.a -lnewmat ../../lib/libutils.a -lqassistantclient -lqwt -lvtkHybrid -lvtkWidgets -lQVTK -lvtkHybrid -lvtkParallel -lvtkexoIIc /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -ldl -lnsl -lutil -lm -ldl -lnsl -lutil -lm -lvtkRendering -lvtkIO -lmysqlclient -lvtkDICOMParser -lvtkNetCDF -lvtkmetaio -lvtksqlite -ljpeg -ltiff -lexpat -lavcodec -lavformat -lavutil -lswscale -lvtkGraphics -lvtkverdict -lvtkImaging -lvtkFiltering -lvtkCommon -lpthread -lvtksys -ldl -lm -lvtkftgl -lfreetype -lgl2ps -lpng -lz -lGL -lXt -lSM -lICE -lX11 -lXext -lXss -lXft ----------------------------------- Thanks, Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
