Package: epcr
Version: 2.3.11-1
Severity: normal
Tags: patch
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu karmic ubuntu-patch
Hi,
Did you had some news from upstream about that bug report?
Anyway, here is the debdiff with the integrated patch.
Fabrice
*** /tmp/tmpMpDqy8
In Ubuntu, we've applied the attached patch to achieve the following:
* debian/patch/gcc_4.4.patch: fix a FTBFS because of missing
#include <cstdio> header in several sources (LP: #?????)
* debian/rules: added include of /usr/share/cdbs/1/rules/simple-patchsys.mk
We thought you might be interested in doing the same.
-- System Information:
Debian Release: squeeze/sid
APT prefers karmic-updates
APT policy: (500, 'karmic-updates'), (500, 'karmic-security'), (500, 'karmic')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.28-13-generic (SMP w/2 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/dash
diff -u epcr-2.3.11/debian/rules epcr-2.3.11/debian/rules
--- epcr-2.3.11/debian/rules
+++ epcr-2.3.11/debian/rules
@@ -4,6 +4,7 @@
include /usr/share/cdbs/1/rules/debhelper.mk
include /usr/share/cdbs/1/class/makefile.mk
+include /usr/share/cdbs/1/rules/simple-patchsys.mk
DEB_MAKE_CLEAN_TARGET := clean
clean::
only in patch2:
unchanged:
--- epcr-2.3.11.orig/debian/patches/gcc_4.4.patch
+++ epcr-2.3.11/debian/patches/gcc_4.4.patch
@@ -0,0 +1,55 @@
+diff -Nur -x '*.orig' -x '*~' epcr-2.3.11/e-PCR_main.cpp epcr-2.3.11.new/e-PCR_main.cpp
+--- epcr-2.3.11/e-PCR_main.cpp 2009-06-04 15:20:09.000000000 +0000
++++ epcr-2.3.11.new/e-PCR_main.cpp 2009-07-01 06:53:57.000000000 +0000
+@@ -36,6 +36,7 @@
+ #include <errno.h>
+ #include <time.h>
+
++#include <cstdio>
+ #include <memory>
+
+ #ifndef STANDALONE
+diff -Nur -x '*.orig' -x '*~' epcr-2.3.11/fahash_main.cpp epcr-2.3.11.new/fahash_main.cpp
+--- epcr-2.3.11/fahash_main.cpp 2009-06-04 15:20:09.000000000 +0000
++++ epcr-2.3.11.new/fahash_main.cpp 2009-07-01 06:53:17.000000000 +0000
+@@ -37,6 +37,7 @@
+ #include <math.h>
+ #include <time.h>
+
++#include <cstdio>
+ #include <memory>
+
+ USING_NCBI_SCOPE;
+diff -Nur -x '*.orig' -x '*~' epcr-2.3.11/famap_main.cpp epcr-2.3.11.new/famap_main.cpp
+--- epcr-2.3.11/famap_main.cpp 2009-06-04 15:20:09.000000000 +0000
++++ epcr-2.3.11.new/famap_main.cpp 2009-07-01 06:53:42.000000000 +0000
+@@ -29,6 +29,7 @@
+
+ #include <epcr/fast_seqio.hpp>
+ #include <stdexcept>
++#include <cstdio>
+ #include <cstdlib>
+ #include <cstring>
+
+diff -Nur -x '*.orig' -x '*~' epcr-2.3.11/re-PCR_main.cpp epcr-2.3.11.new/re-PCR_main.cpp
+--- epcr-2.3.11/re-PCR_main.cpp 2009-06-04 15:20:09.000000000 +0000
++++ epcr-2.3.11.new/re-PCR_main.cpp 2009-07-01 06:52:45.000000000 +0000
+@@ -37,6 +37,7 @@
+ #include <errno.h>
+
+ #include <stdexcept>
++#include <cstdio>
+ #include <string>
+ #include <memory>
+
+diff -Nur -x '*.orig' -x '*~' epcr-2.3.11/stsmatch.cpp epcr-2.3.11.new/stsmatch.cpp
+--- epcr-2.3.11/stsmatch.cpp 2009-06-04 15:20:10.000000000 +0000
++++ epcr-2.3.11.new/stsmatch.cpp 2009-07-01 06:54:21.000000000 +0000
+@@ -33,6 +33,7 @@
+
+ #include <errno.h>
+ #include <ctype.h>
++#include <cstdio>
+ #include <stdexcept>
+
+ USING_NCBI_SCOPE;
