Package: pymol Version: 1.1-1 Severity: normal Hi,
structural alignments do not work in Pymol because it tries to find the needed BLOSUM matrix in /usr/share/pymol/pymol/matrices/BLOSUM62, but it is located in /usr/share/pymol/matrices/BLOSUM62. (Notice the extra "pymol" in the first path.) I did not dive into that since I needed a quick fix and a symlink did the trick. Best regards Manuel -- System Information: Debian Release: 5.0 APT prefers testing APT policy: (500, 'testing'), (500, 'stable'), (200, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 2.6.26-1-amd64 (SMP w/2 CPU cores) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages pymol depends on: ii freeglut3 2.4.0-6.1 OpenGL Utility Toolkit ii libc6 2.7-16 GNU C Library: Shared libraries ii libfreetype6 2.3.7-2 FreeType 2 font engine, shared lib ii libgcc1 1:4.3.2-1.1 GCC support library ii libgl1-mesa-glx [libgl 7.0.3-7 A free implementation of the OpenG ii libglu1-mesa [libglu1] 7.0.3-7 The OpenGL utility library (GLU) ii libpng12-0 1.2.27-2 PNG library - runtime ii libstdc++6 4.3.2-1.1 The GNU Standard C++ Library v3 ii python 2.5.2-3 An interactive high-level object-o ii python-pmw 1.3.2-3 Pmw -- Python MegaWidgets ii python-support 0.8.4 automated rebuilding support for P ii python-tk 2.5.2-1 Tkinter - Writing Tk applications ii zlib1g 1:1.2.3.3.dfsg-12 compression library - runtime Versions of packages pymol recommends: ii apbs 1.0.0-2 Adaptive Poisson Boltzmann Solver pymol suggests no packages. -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
