Package: fsl Version: 4.1.1-1~etch.apsy1 Severity: important
Finally I've decided to move to fsl 4.1.1 from 4.0... We have quite a few analyses done with previous versions and usual workflow is to have pregenerated (per subject) design.fsf files and feed them into command line 'feat' tool (instead of going through graphical Feat). Unfortunately first level analysis using 4.1.1's feat (v 5.98) ran on design.fsf from previous version (FEAT 5.63) failed. Excerpts from report_log.html: ,--- | /usr/share/fsl/bin/feat_model design | Can't find key fmri(evs_vox) `--- which leads to absent design.mat, thus film_gls fails later on with ,--- | /usr/share/fsl/bin/film_gls -rn stats -sa -ms 5 filtered_func_data design.mat 1000.0 | Log directory is: stats | | | An exception has been thrown | Unable to open design.mat | Error: FILM did not complete - it probably ran out of memory `--- Adding ,--- | set fmri(evs_vox) 0 `--- into design.fsf seems to help at this level, but I am not sure if it is not the same cause (some additional options introduced in feat from FSL 4.1.1) which leads to the failed 2nd level analysis which will be reported in the separate bugreport. I think that assuming defaults for freshly introduced options in design.fsf is an important issue since it forbids bulk analysis of the data from previous versions of FSL (even of the same major release FSL 4) -- System Information: Debian Release: 4.0 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Shell: /bin/sh linked to /bin/bash Kernel: Linux 2.6.18-5-amd64 Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Versions of packages fsl depends on: ii bc 1.06-20 The GNU bc arbitrary precision cal ii dc 1.06-20 The GNU dc arbitrary precision rev ii dillo [www-br 0.8.5-4.1 Small and fast web browser ii elinks [www-b 0.11.1-1.2etch1 advanced text-mode WWW browser ii elvis [www-br 2.2.0-8 powerful clone of the vi/ex text e ii fslview 3.0+4.0.2-3~etch.apsy1 viewer for (f)MRI and DTI data ii iceape-browse 1.0.13~pre080323b-0etch3 Iceape Navigator (Internet browser ii iceweasel [ww 2.0.0.17-0etch1 lightweight web browser based on M ii konqueror [ww 4:3.5.5a.dfsg.1-6etch2 KDE's advanced file manager, web b ii libc6 2.3.6.ds1-13etch7 GNU C Library: Shared libraries ii libgcc1 1:4.1.1-21 GCC support library ii libgd2-xpm 2.0.36~rc1~dfsg-3~etch1 GD Graphics Library version 2 ii libgdchart-gd 0.11.5-3 Generate graphs using the GD libra ii libnewmat10 1.10.4-2 matrix manipulations C++ library ii libnifti1 1.1.0-2~etch.apsy1 IO libraries for the NIfTI-1 data ii libpng12-0 1.2.15~beta5-1 PNG library - runtime ii libstdc++6 4.1.1-21 The GNU Standard C++ Library v3 ii links [www-br 0.99+1.00pre12-1.1 Character mode WWW browser ii lynx [www-bro 2.8.5-2sarge2.2 Text-mode WWW Browser ii mozilla-firef 2.0.0.17-0etch1 Transition package for iceweasel r ii tcl8.4 8.4.12-1.1 Tcl (the Tool Command Language) v8 ii tcsh [c-shell 6.14.00-7 TENEX C Shell, an enhanced version ii tk8.4 8.4.12-1etch2 Tk toolkit for Tcl and X11, v8.4 - ii w3-el-e21 [ww 4.0pre.2001.10.27.nodocs-4 Web browser for GNU Emacs 21 ii w3m [www-brow 0.5.1-5.1 WWW browsable pager with excellent ii xemacs21-mule 21.4.19-2 highly customizable text editor -- ii zlib1g 1:1.2.3-13 compression library - runtime Versions of packages fsl recommends: ii fsl-atlases 4.1.0-1 MNI152 standard space brain atlase ii fsl-doc 4.1.1-1~etch.apsy1 documentation for FSL -- no debconf information -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
