I think the best way would be if you can somehow start with a new mozilla profile (e.g. a new test user on your system), then import it to thunderbird (during initial start of thunderbird) to reproduce this.
I've done that also. If I create a new user and login as that user and then subscribe to my IMAP account with Mozilla as that user and then migrate to MT as that user, the problem does not occur.
Note that I also wrote this once:
I just replaced Thunderbird 0.9 with Thunderbird 1.0 on my Windows (virtual) machine that uses the same IMAP folder and now I also get it there!
Strangely enough there was no problem when I migrated Mozilla The Suite data to Tbird 0.8, at the time...! I'm baffled.
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