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I can also confirm this.

Situation: a lot of packages available for upgrade, some of them
manually, and some automatically installed.

Step 1: Mark all packages for upgrade;
Step 2: Quit aptitude and start it again;
Result: All upgradeable packages have state "iu";

Now comes the interesting part.

Step 3: Mark all upgradeable packages auto-installed "iuA";
Step 4: Put all of them on hold;
Result: The states are back to what they were before step 1.

Note that this happens even though I marked all of them auto-installed.
This does not seem to work if you mark only some of the packages (the
marked ones still loose the state), or if you mark them on by one (you
have to mark the section title (or whatever it is called) for upgrade).

So it seems that the states are not forgotten, but rather the
information about the sates is displayed incorrectly. Also this seems to
be specific to 64-bit platforms, as everyone who can confirm this and
included system information, are running 64-bit systems.

Package: aptitude
Version: 0.4.5.4-1

- -- System Information:
Debian Release: lenny/sid
  APT prefers unstable
  APT policy: (990, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.22-rc7-git3.666.1 (SMP w/2 CPU cores; PREEMPT)
Locale: LANG=lt_LT.UTF-8, LC_CTYPE=lt_LT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages aptitude depends on:
ii  apt [libapt-pkg-libc6.5 0.7.3
ii  libc6                   2.6-1
ii  libgcc1                 1:4.2-20070707-1
ii  libncursesw5            5.6-3
ii  libsigc++-2.0-0c2a      2.0.17-2
ii  libstdc++6              4.2-20070707-1

Versions of packages aptitude recommends:
pn  aptitude-doc-en | aptitude-do <none>
ii  libparse-debianchangelog-perl 1.0-1

- -- no debconf information

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