Package: dicomnifti Version: 2.25-2~etch.apsy0 Severity: normal
I found freesurfer puking on dinifti converted nii.gz files. Here is the difference in the header between mri_convert (from freesurfer) and dinifti generated nifti files: *$> nifti_tool -diff_hdr -infile t1_mprage_1MM.nii.gz t1_mprage_1MM-dinifti.nii.gz name offset nvals values ------------------- ------ ----- ------ regular 38 1 regular 38 1 r dim_info 39 1 0 dim_info 39 1 54 dim 40 8 3 256 256 176 1 1 1 1 dim 40 8 5 256 256 176 1 1 1 1 pixdim 76 8 1.0 0.898438 0.898438 1.0 1.0 1.0 1.0 1.0 pixdim 76 8 1.0 0.898438 0.898438 1.0 0.0 1.0 1.0 1.0 slice_end 120 1 0 slice_end 120 1 175 xyzt_units 123 1 10 xyzt_units 123 1 18 descrip 148 80 FreeSurfer Feb 7 2007 descrip 148 80 dinifti v2.25 NIfTI-1 Single file format sform_code 254 1 1 sform_code 254 1 0 quatern_b 256 1 -0.016591 quatern_b 256 1 -0.0 quatern_c 260 1 0.142705 quatern_c 260 1 -0.142725 quatern_d 264 1 -0.989623 quatern_d 264 1 0.989762 qoffset_x 268 1 113.67543 qoffset_x 268 1 116.159546 qoffset_y 272 1 129.392715 qoffset_y 272 1 104.250298 qoffset_z 276 1 -55.742279 qoffset_z 276 1 28.033274 srow_x 280 4 -0.897933 -0.0 0.033521 113.67543 srow_x 280 4 0.0 0.0 0.0 0.0 srow_y 296 4 -0.008509 -0.861835 -0.282369 129.392715 srow_y 296 4 0.0 0.0 0.0 0.0 srow_z 312 4 0.028889 -0.253833 0.95872 -55.742279 srow_z 312 4 0.0 0.0 0.0 0.0 Sample data available upon request ;-) -- System Information: Debian Release: 4.0 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Shell: /bin/sh linked to /bin/bash Kernel: Linux 2.6.18-4-amd64 Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Versions of packages dicomnifti depends on: ii libc6 2.3.6.ds1-13 GNU C Library: Shared libraries ii libgcc1 1:4.1.1-21 GCC support library ii libniftiio0 0.4-1 IO libraries for the NIfTI-1 data ii libstdc++6 4.1.1-21 The GNU Standard C++ Library v3 ii zlib1g 1:1.2.3-13 compression library - runtime dicomnifti recommends no packages. -- no debconf information -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
