Package: pymol Version: 0.98+0.99rc6-2 Severity: normal *** Please type your report below this line ***
When choosing the mutagenisis wizard pymol gives an error
Traceback (most recent call last):
File "/var/lib/python-support/python2.4/pymol/parser.py", line 203, in parse
result=apply(kw[nest][0],args[nest],kw_args[nest])
File "/var/lib/python-support/python2.4/pymol/wizarding.py", line 84, in
wizard
r = _wizard(name,arg,kwd,0)
File "/var/lib/python-support/python2.4/pymol/wizarding.py", line 44, in
_wizard
wiz = apply(getattr(mod_obj,oname),arg,kwd)
File "/var/lib/python-support/python2.4/pymol/wizard/mutagenesis.py", line
38, in __init__
self.ind_library = io.pkl.fromFile(os.environ['PYMOL_PATH']+
File "/var/lib/python-support/python2.4/chempy/pkl.py", line 23, in fromFile
fp = self.my_open(fname,'rb')
File "/var/lib/python-support/python2.4/chempy/__init__.py", line 165, in
my_open
return open(fname,mode)
IOError: [Errno 2] No such file or directory:
'/var/lib/python-support/python2.4/pymol//data/chempy/sidechains/sc_bb_ind.pkl'
In fact sc_bb_ind.pkl is located in /usr/share/chempy/sidechains.
Creating a dir /var/lib/python-support/python2.4/pymol/data/ an
linking /usr/share/chempy/ to this directory works as an intermediate
solution.
Hendrik
-- System Information:
Debian Release: 4.0
APT prefers testing
APT policy: (500, 'testing'), (20, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-3-686
Locale: LANG=en_GB.ISO-8859-15, LC_CTYPE=en_GB.ISO-8859-15 (charmap=ISO-8859-15)
Versions of packages pymol depends on:
ii freeglut3 2.4.0-5 OpenGL Utility Toolkit
ii libc6 2.3.6.ds1-10 GNU C Library: Shared libraries
ii libfreetype6 2.2.1-5 FreeType 2 font engine, shared lib
ii libgl1-mesa-glx [libgl1] 6.5.1-0.5 A free implementation of the OpenG
ii libglu1-mesa [libglu1] 6.5.1-0.5 The OpenGL utility library (GLU)
ii libpng12-0 1.2.15~beta5-1 PNG library - runtime
ii python 2.4.4-2 An interactive high-level object-o
ii python-pmw 1.2-5 Pmw -- Python MegaWidgets
ii python-support 0.5.6 automated rebuilding support for p
ii python-tk 2.4.4-1 Tkinter - Writing Tk applications
ii zlib1g 1:1.2.3-13 compression library - runtime
Versions of packages pymol recommends:
pn apbs <none> (no description available)
-- no debconf information
--
PGP ID 65C92061
pgpQRiofEmL2D.pgp
Description: PGP signature
