Package: pymol
Version: 0.98+0.99rc6-2
Tags: patch
Followup-For: Bug #385550
Dear Michael,
I am interested to strenghen Debian in the field of biological
alignments, so here is a patch to solve this bug if you accept the
solution provided by the reporter.
Have a nice day,
Charles Plessy, Wako, Saitama, Japan.
-- System Information:
Debian Release: testing/unstable
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Versions of packages pymol depends on:
ii freeglut3 2.4.0-5 OpenGL Utility Toolkit
ii libc6 2.3.6.ds1-7 GNU C Library: Shared libraries
ii libfreetype6 2.2.1-5 FreeType 2 font engine, shared lib
ii libgl1-mesa-glx [libgl1] 6.4.2-1 A free implementation of the OpenG
ii libglu1-mesa [libglu1] 6.4.2-1 The OpenGL utility library (GLU)
ii libpng12-0 1.2.8rel-7 PNG library - runtime
ii python 2.4.3-11 An interactive high-level object-o
ii python-pmw 1.2-4 Pmw -- Python MegaWidgets
ii python-support 0.5.4 automated rebuilding support for p
ii python-tk 2.4.4-1 Tkinter - Writing Tk applications
ii zlib1g 1:1.2.3-13 compression library - runtime
Versions of packages pymol recommends:
pn apbs <none> (no description available)
-- no debconf information
diff -u pymol-0.98+0.99rc6/debian/patches/00list
pymol-0.98+0.99rc6/debian/patches/00list
--- pymol-0.98+0.99rc6/debian/patches/00list
+++ pymol-0.98+0.99rc6/debian/patches/00list
@@ -7,0 +8 @@
+12_change_path_to_matrices.dpatch
diff -u pymol-0.98+0.99rc6/debian/changelog pymol-0.98+0.99rc6/debian/changelog
--- pymol-0.98+0.99rc6/debian/changelog
+++ pymol-0.98+0.99rc6/debian/changelog
@@ -1,3 +1,9 @@
+pymol (0.98+0.99rc6-3) unstable; urgency=low
+
+ * Changed path to matrices in modules/pymol/fitting.py; closes: #385550
+
+ -- Charles Plessy <[EMAIL PROTECTED]> Thu, 9 Nov 2006 23:03:50 +0900
+
pymol (0.98+0.99rc6-2) unstable; urgency=low
* debian/control (Recommends): Added apbs.
only in patch2:
unchanged:
--- pymol-0.98+0.99rc6.orig/debian/patches/12_change_path_to_matrices.dpatch
+++ pymol-0.98+0.99rc6/debian/patches/12_change_path_to_matrices.dpatch
@@ -0,0 +1,19 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 12_change_path_to_matrices by Charles Plessy <[EMAIL PROTECTED]>
+##
+## DP: Sets the path to the matrices to where they are installed in Debian.
+## DP: Thanks to Thomas Gaillard for his bug report.
+
[EMAIL PROTECTED]@
+
+--- pymol-0.98+0.99rc6/modules/pymol/fitting.py.old 2006-11-09
22:53:09.000000000 +0900
++++ pymol-0.98+0.99rc6/modules/pymol/fitting.py 2006-11-09
22:54:08.000000000 +0900
+@@ -61,7 +61,7 @@
+ r = DEFAULT_ERROR
+ source = selector.process(source)
+ target = selector.process(target)
+- mfile = cmd.exp_path("$PYMOL_PATH/data/pymol/matrices/"+matrix)
++ mfile = cmd.exp_path("usr/share/pymol/matrices/"+matrix)
+ if object==None: object=''
+ try:
+ lock()
