Package: src:rpy2 Version: 3.6.4-1 Severity: serious Tags: ftbfs forky sid Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202512/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:rpy2, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' rm -rfv .pybuild build */build src/*.egg-info */src/*.egg-info find . -name __pycache__ | rm -rfv make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild [... snipped ...] copying build/lib/rpy2/robjects/tests/robjects/test_packages.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/test_array.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/test_vector_datetime.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/test_rs4.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/test_dataframe.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/test_serialization.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/tests/robjects/test_robjects.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/tests/robjects copying build/lib/rpy2/robjects/packages.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects copying build/lib/rpy2/robjects/methods.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects copying build/lib/rpy2/robjects/pandas2ri.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects copying build/lib/rpy2/robjects/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects creating build/bdist.linux-x86_64/wheel/rpy2/interactive copying build/lib/rpy2/interactive/packages.py -> build/bdist.linux-x86_64/wheel/./rpy2/interactive copying build/lib/rpy2/interactive/process_revents.py -> build/bdist.linux-x86_64/wheel/./rpy2/interactive copying build/lib/rpy2/interactive/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/interactive creating build/bdist.linux-x86_64/wheel/rpy2/ipython copying build/lib/rpy2/ipython/rmagic.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython creating build/bdist.linux-x86_64/wheel/rpy2/ipython/tests copying build/lib/rpy2/ipython/tests/test_html.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython/tests copying build/lib/rpy2/ipython/tests/test_ggplot.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython/tests copying build/lib/rpy2/ipython/tests/test_rmagic.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython/tests copying build/lib/rpy2/ipython/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython/tests copying build/lib/rpy2/ipython/ggplot.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython copying build/lib/rpy2/ipython/html.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython copying build/lib/rpy2/ipython/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython running install_egg_info Copying src/rpy2_robjects.egg-info to build/bdist.linux-x86_64/wheel/./rpy2_robjects-3.6.3.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/rpy2_robjects-3.6.3.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/.tmp-kfj92hxw/rpy2_robjects-3.6.3-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'rpy2/interactive/__init__.py' adding 'rpy2/interactive/packages.py' adding 'rpy2/interactive/process_revents.py' adding 'rpy2/ipython/__init__.py' adding 'rpy2/ipython/ggplot.py' adding 'rpy2/ipython/html.py' adding 'rpy2/ipython/rmagic.py' adding 'rpy2/ipython/tests/__init__.py' adding 'rpy2/ipython/tests/test_ggplot.py' adding 'rpy2/ipython/tests/test_html.py' adding 'rpy2/ipython/tests/test_rmagic.py' adding 'rpy2/robjects/__init__.py' adding 'rpy2/robjects/constants.py' adding 'rpy2/robjects/conversion.py' adding 'rpy2/robjects/environments.py' adding 'rpy2/robjects/functions.py' adding 'rpy2/robjects/help.py' adding 'rpy2/robjects/language.py' adding 'rpy2/robjects/methods.py' adding 'rpy2/robjects/numpy2ri.py' adding 'rpy2/robjects/packages.py' adding 'rpy2/robjects/packages_utils.py' adding 'rpy2/robjects/pandas2ri.py' adding 'rpy2/robjects/robject.py' adding 'rpy2/robjects/vectors.py' adding 'rpy2/robjects/version.py' adding 'rpy2/robjects/lib/__init__.py' adding 'rpy2/robjects/lib/dbplyr.py' adding 'rpy2/robjects/lib/dplyr.py' adding 'rpy2/robjects/lib/ggplot2.py' adding 'rpy2/robjects/lib/grdevices.py' adding 'rpy2/robjects/lib/grid.py' adding 'rpy2/robjects/lib/tidyr.py' adding 'rpy2/robjects/tests/robjects/__init__.py' adding 'rpy2/robjects/tests/robjects/test_array.py' adding 'rpy2/robjects/tests/robjects/test_conversion.py' adding 'rpy2/robjects/tests/robjects/test_conversion_numpy.py' adding 'rpy2/robjects/tests/robjects/test_dataframe.py' adding 'rpy2/robjects/tests/robjects/test_environment.py' adding 'rpy2/robjects/tests/robjects/test_formula.py' adding 'rpy2/robjects/tests/robjects/test_function.py' adding 'rpy2/robjects/tests/robjects/test_help.py' adding 'rpy2/robjects/tests/robjects/test_language.py' adding 'rpy2/robjects/tests/robjects/test_methods.py' adding 'rpy2/robjects/tests/robjects/test_packages.py' adding 'rpy2/robjects/tests/robjects/test_packages_utils.py' adding 'rpy2/robjects/tests/robjects/test_pandas_conversions.py' adding 'rpy2/robjects/tests/robjects/test_robjects.py' adding 'rpy2/robjects/tests/robjects/test_rs4.py' adding 'rpy2/robjects/tests/robjects/test_serialization.py' adding 'rpy2/robjects/tests/robjects/test_translated_function.py' adding 'rpy2/robjects/tests/robjects/test_vector.py' adding 'rpy2/robjects/tests/robjects/test_vector_datetime.py' adding 'rpy2/robjects/tests/robjects/test_vector_extractdelegator.py' adding 'rpy2/robjects/tests/robjects/test_vector_factor.py' adding 'rpy2/robjects/tests/robjects/lib/__init__.py' adding 'rpy2/robjects/tests/robjects/lib/test_dbplyr.py' adding 'rpy2/robjects/tests/robjects/lib/test_dplyr.py' adding 'rpy2/robjects/tests/robjects/lib/test_ggplot2.py' adding 'rpy2/robjects/tests/robjects/lib/test_grdevices.py' adding 'rpy2/robjects/tests/robjects/lib/test_grid.py' adding 'rpy2/robjects/tests/robjects/lib/test_tidyr.py' adding 'rpy2_robjects-3.6.3.dist-info/METADATA' adding 'rpy2_robjects-3.6.3.dist-info/WHEEL' adding 'rpy2_robjects-3.6.3.dist-info/top_level.txt' adding 'rpy2_robjects-3.6.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built rpy2_robjects-3.6.3-py3-none-any.whl I: pybuild plugin_pyproject:155: Unpacking wheel built for python3.13 with "installer" module rm -fv .pybuild/*/*.whl removed '.pybuild/cpython3_3.13/rpy2_robjects-3.6.3-py3-none-any.whl' removed '.pybuild/cpython3_3.14/rpy2_robjects-3.6.3-py3-none-any.whl' dh_auto_build I: pybuild plugin_pyproject:131: Building wheel for python3.14 with "build" module I: pybuild base:317: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14 * Building wheel... running bdist_wheel running build running build_py creating build/lib/rpy2 copying src/rpy2/__init__.py -> build/lib/rpy2 running egg_info creating src/rpy2.egg-info writing src/rpy2.egg-info/PKG-INFO writing dependency_links to src/rpy2.egg-info/dependency_links.txt writing requirements to src/rpy2.egg-info/requires.txt writing top-level names to src/rpy2.egg-info/top_level.txt writing manifest file 'src/rpy2.egg-info/SOURCES.txt' reading manifest file 'src/rpy2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README' anywhere in distribution warning: no previously-included files matching '*patch*' found anywhere in distribution warning: no previously-included files matching '*diff*' found anywhere in distribution warning: no previously-included files matching '.hg' found anywhere in distribution warning: no files found matching 'MANIFEST' warning: no files found matching '_rinterface_cffi_build' warning: no files found matching 'rpy/__init__.py' warning: no files found matching 'rpy/situation.py' warning: no files found matching '*.py' under directory 'rpy/robjects' warning: no files found matching '*.py' under directory 'rpy/ipython' warning: no files found matching '*.py' under directory 'rpy/interactive' warning: no files found matching '*.py' under directory 'rpy/rlike' no previously-included directories found matching 'dist' warning: no files found matching 'doc/source/rpy2_logo.png' adding license file 'LICENSE' writing manifest file 'src/rpy2.egg-info/SOURCES.txt' copying src/rpy2/py.typed -> build/lib/rpy2 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/rpy2 copying build/lib/rpy2/py.typed -> build/bdist.linux-x86_64/wheel/./rpy2 copying build/lib/rpy2/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2 running install_egg_info Copying src/rpy2.egg-info to build/bdist.linux-x86_64/wheel/./rpy2-3.6.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/rpy2-3.6.4.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14/.tmp-n4lktgd_/rpy2-3.6.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'rpy2/__init__.py' adding 'rpy2/py.typed' adding 'rpy2-3.6.4.dist-info/licenses/LICENSE' adding 'rpy2-3.6.4.dist-info/METADATA' adding 'rpy2-3.6.4.dist-info/WHEEL' adding 'rpy2-3.6.4.dist-info/top_level.txt' adding 'rpy2-3.6.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built rpy2-3.6.4-py3-none-any.whl I: pybuild plugin_pyproject:155: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:131: Building wheel for python3.13 with "build" module I: pybuild base:317: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13 * Building wheel... running bdist_wheel running build running build_py running egg_info writing src/rpy2.egg-info/PKG-INFO writing dependency_links to src/rpy2.egg-info/dependency_links.txt writing requirements to src/rpy2.egg-info/requires.txt writing top-level names to src/rpy2.egg-info/top_level.txt reading manifest file 'src/rpy2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README' anywhere in distribution warning: no previously-included files matching '*patch*' found anywhere in distribution warning: no previously-included files matching '*diff*' found anywhere in distribution warning: no previously-included files matching '.hg' found anywhere in distribution warning: no files found matching 'MANIFEST' warning: no files found matching '_rinterface_cffi_build' warning: no files found matching 'rpy/__init__.py' warning: no files found matching 'rpy/situation.py' warning: no files found matching '*.py' under directory 'rpy/robjects' warning: no files found matching '*.py' under directory 'rpy/ipython' warning: no files found matching '*.py' under directory 'rpy/interactive' warning: no files found matching '*.py' under directory 'rpy/rlike' no previously-included directories found matching 'dist' warning: no files found matching 'doc/source/rpy2_logo.png' adding license file 'LICENSE' writing manifest file 'src/rpy2.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/rpy2 copying build/lib/rpy2/py.typed -> build/bdist.linux-x86_64/wheel/./rpy2 copying build/lib/rpy2/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2 running install_egg_info Copying src/rpy2.egg-info to build/bdist.linux-x86_64/wheel/./rpy2-3.6.4.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/rpy2-3.6.4.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/.tmp-znzu5idf/rpy2-3.6.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'rpy2/__init__.py' adding 'rpy2/py.typed' adding 'rpy2-3.6.4.dist-info/licenses/LICENSE' adding 'rpy2-3.6.4.dist-info/METADATA' adding 'rpy2-3.6.4.dist-info/WHEEL' adding 'rpy2-3.6.4.dist-info/top_level.txt' adding 'rpy2-3.6.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built rpy2-3.6.4-py3-none-any.whl I: pybuild plugin_pyproject:155: Unpacking wheel built for python3.13 with "installer" module make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules override_dh_auto_test make[1]: Entering directory '/<<PKGBUILDDIR>>' TZ=America/New_York LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 dh_auto_test I: pybuild base:317: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14/build; python3.14 -m pytest ============================= test session starts ============================== platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 867 items / 1 error ==================================== ERRORS ==================================== ______________ ERROR collecting rpy2/ipython/tests/test_rmagic.py ______________ rpy2/ipython/tests/test_rmagic.py:70: in <module> @pytest.mark.skipif(IPython is None, /usr/lib/python3/dist-packages/_pytest/mark/structures.py:401: in __call__ store_mark(unwrapped_func, self.mark, stacklevel=3) /usr/lib/python3/dist-packages/_pytest/mark/structures.py:466: in store_mark warnings.warn(MARKED_FIXTURE, stacklevel=stacklevel) E pytest.PytestRemovedIn9Warning: Marks applied to fixtures have no effect E See docs: https://docs.pytest.org/en/stable/deprecations.html#applying-a-mark-to-a-fixture-function =============================== warnings summary =============================== rpy2/robjects/lib/ggplot2.py:76 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14/build/rpy2/robjects/lib/ggplot2.py:76: UserWarning: This was designed against ggplot2 versions starting with 3.5. but you have 3.5.1. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ ERROR rpy2/ipython/tests/test_rmagic.py - pytest.PytestRemovedIn9Warning: Mar... !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! ========================= 1 warning, 1 error in 8.24s ========================== E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14/build; python3.14 -m pytest I: pybuild base:317: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 867 items / 1 error ==================================== ERRORS ==================================== ______________ ERROR collecting rpy2/ipython/tests/test_rmagic.py ______________ rpy2/ipython/tests/test_rmagic.py:70: in <module> @pytest.mark.skipif(IPython is None, /usr/lib/python3/dist-packages/_pytest/mark/structures.py:401: in __call__ store_mark(unwrapped_func, self.mark, stacklevel=3) /usr/lib/python3/dist-packages/_pytest/mark/structures.py:466: in store_mark warnings.warn(MARKED_FIXTURE, stacklevel=stacklevel) E pytest.PytestRemovedIn9Warning: Marks applied to fixtures have no effect E See docs: https://docs.pytest.org/en/stable/deprecations.html#applying-a-mark-to-a-fixture-function =============================== warnings summary =============================== rpy2/robjects/lib/ggplot2.py:76 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/rpy2/robjects/lib/ggplot2.py:76: UserWarning: This was designed against ggplot2 versions starting with 3.5. but you have 3.5.1. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ ERROR rpy2/ipython/tests/test_rmagic.py - pytest.PytestRemovedIn9Warning: Mar... !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! ========================= 1 warning, 1 error in 4.56s ========================== E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build; python3.13 -m pytest dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13 make[1]: *** [debian/rules:33: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:20: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
