Package: python3-biom-format Version: 2.1.17-1 Severity: normal
Hi, I got some SyntaxWarning when installing python3-biom-format. These files looks like vendored copies of numpydoc. At worst the filenames down /usr/lib/python3/dist-packages/doc/sphinxext/ could clash and makes this not installable with the real numpydoc. Please se if these files could be de-vendored. Greetings Alexandre https://github.com/biocore/biom-format/blob/master/doc/sphinxext/numpydoc/numpydoc/docscrape.py Paramétrage de python3-biom-format (2.1.17-1) ... /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:274: SyntaxWarning: invalid escape sequence '\w' if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str): /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:316: SyntaxWarning: invalid escape sequence '\*' return [self['Signature'].replace('*','\*')] + [''] /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:438: SyntaxWarning: invalid escape sequence '\*' argspec = argspec.replace('*','\*') /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:456: SyntaxWarning: invalid escape sequence '\*' signature = self['Signature'].replace('*', '\*') /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:274: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option. if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str): /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:316: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. return [self['Signature'].replace('*','\*')] + [''] /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:438: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. argspec = argspec.replace('*','\*') /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:456: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. signature = self['Signature'].replace('*', '\*') -- System Information: Debian Release: forky/sid APT prefers testing APT policy: (501, 'testing'), (450, 'unstable'), (400, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 6.16.12+deb14+1-amd64 (SMP w/4 CPU threads; PREEMPT) Locale: LANG=fr_BE.UTF-8, LC_CTYPE=fr_BE.UTF-8 (charmap=UTF-8), LANGUAGE=fr_BE:fr Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-biom-format depends on: ii libc6 2.41-12 ii python3 3.13.7-2 ii python3-click 8.2.0+0.really.8.1.8-1 ii python3-h5py 3.15.1-3 ii python3-numpy [python3-numpy2-abi0] 1:2.3.4+ds-3 ii python3-pandas 2.3.3+dfsg-2 ii python3-scipy 1.15.3-1.1 python3-biom-format recommends no packages. Versions of packages python3-biom-format suggests: pn python-biom-format-doc <none> -- no debconf information
