Source: raxml Version: 8.2.13+dfsg-2 Severity: minor Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-shuffle
Hi, GNU Make now has a --shuffle option that simulates non-deterministic ordering of target prerequisites. See https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous work in Debian by Santiago Vila: https://people.debian.org/~sanvila/make-shuffle/ This package fails to build with make --shuffle=reverse. This is likely to be caused by a missing dependency in debian/rules or an upstream Makefile. More information about this mass bug filing is available at https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle Relevant part (hopefully): > gcc -o raxmlHPC-PTHREADS axml.o optimizeModel.o multiple.o searchAlgo.o > topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o > rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o > newviewGenericSpecial.o makenewzGenericSpecial.o classify.o > fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o > ancestralStates.o mem_alloc.o eigen.o -lm -pthread -Wl,-z,relro -Wl,-z,now > /usr/bin/ld: cannot find multiple.o: No such file or directory > /usr/bin/ld: cannot find searchAlgo.o: No such file or directory > /usr/bin/ld: cannot find topologies.o: No such file or directory > /usr/bin/ld: cannot find parsePartitions.o: No such file or directory > /usr/bin/ld: cannot find treeIO.o: No such file or directory > /usr/bin/ld: cannot find rapidBootstrap.o: No such file or directory > /usr/bin/ld: cannot find evaluatePartialGenericSpecial.o: No such file or > directory > /usr/bin/ld: cannot find evaluateGenericSpecial.o: No such file or directory > /usr/bin/ld: cannot find classify.o: No such file or directory > /usr/bin/ld: cannot find fastDNAparsimony.o: No such file or directory > /usr/bin/ld: cannot find fastSearch.o: No such file or directory > /usr/bin/ld: cannot find leaveDropping.o: No such file or directory > /usr/bin/ld: cannot find rmqs.o: No such file or directory > /usr/bin/ld: cannot find rogueEPA.o: No such file or directory > /usr/bin/ld: cannot find ancestralStates.o: No such file or directory > /usr/bin/ld: cannot find mem_alloc.o: No such file or directory > /usr/bin/ld: cannot find eigen.o: No such file or directory > collect2: error: ld returned 1 exit status The full build log is available from: http://qa-logs.debian.net/2025/05/05/shuffle/reverse/raxml_8.2.13+dfsg-2_unstable_reverse.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects
