Source: consensuscore Version: 1.1.1+dfsg-8 Severity: minor Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-shuffle
Hi, GNU Make now has a --shuffle option that simulates non-deterministic ordering of target prerequisites. See https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous work in Debian by Santiago Vila: https://people.debian.org/~sanvila/make-shuffle/ This package fails to build with make --shuffle=reverse. This is likely to be caused by a missing dependency in debian/rules or an upstream Makefile. More information about this mass bug filing is available at https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle Relevant part (hopefully): > make[2]: Entering directory > '/build/reproducible-path/consensuscore-1.1.1+dfsg' > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o' due > to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Logging/Logging.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o' > due to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AlignConfig.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o' > due to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AffineAlignment.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o' > due to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Align/PairwiseAlignment.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o' > due to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Align/LinearAlignment.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o' due > to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Checksum.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o' > due to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Edna/EdnaCounts.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o > make/Cpp.mk:24: update target > '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o' due > to: target does not exist > g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -fopenmp-simd -DSIMDE_ENABLE_OPENMP > -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic > -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include > -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ > -Wl,-z,relro -Wl,-z,now -c src/C++/Statistics/Binomial.cpp -o > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o > Assembler messages: > Fatal error: can't create > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o: No > such file or directory > make[2]: *** [make/Cpp.mk:24: > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o] > Error 1 shuffle=reverse The full build log is available from: http://qa-logs.debian.net/2025/05/05/shuffle/reverse/consensuscore_1.1.1+dfsg-8_unstable_reverse.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects
