Source: crac Version: 2.5.2+dfsg-6 Severity: minor Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-shuffle
Hi, GNU Make now has a --shuffle option that simulates non-deterministic ordering of target prerequisites. See https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous work in Debian by Santiago Vila: https://people.debian.org/~sanvila/make-shuffle/ This package fails to build with make --shuffle=reverse. This is likely to be caused by a missing dependency in debian/rules or an upstream Makefile. More information about this mass bug filing is available at https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle Relevant part (hopefully): > make[6]: Entering directory '/build/reproducible-path/crac-2.5.2+dfsg/test_f' > Makefile:971: update target 'test_index.sh.log' due to: target does not exist > p='test_index.sh'; \ > b='test_index.sh'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "test_index.sh.log" in */*) > am__odir=`echo "./test_index.sh.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; log='test_index.sh.log'; if test -n > ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../config/test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: test_index.sh > Makefile:964: update target 'launch_sg.sh.log' due to: target does not exist > p='launch_sg.sh'; \ > b='launch_sg.sh'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "launch_sg.sh.log" in */*) > am__odir=`echo "./launch_sg.sh.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; log='launch_sg.sh.log'; if test -n > ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../config/test-driver > --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > FAIL: launch_sg.sh > Makefile:957: update target 'index_genomes.sh.log' due to: target does not > exist > p='index_genomes.sh'; \ > b='index_genomes.sh'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "index_genomes.sh.log" in > */*) am__odir=`echo "./index_genomes.sh.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='index_genomes.sh.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../config/test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: index_genomes.sh > Makefile:804: update target 'test-suite.log' due to: target does not exist > bases='index_genomes.sh.log launch_sg.sh.log test_index.sh.log'; bases=`for i > in $bases; do echo $i; done | sed 's/\.log$//'`; bases=`echo $bases`; \ > am__f_ok () { test -f "$1" && test -r "$1"; }; \ > redo_bases=`for i in $bases; do \ > am__f_ok $i.trs && am__f_ok $i.log || echo $i; \ > done`; \ > if test -n "$redo_bases"; then \ > redo_logs=`for i in $redo_bases; do echo $i.log; done`; \ > redo_results=`for i in $redo_bases; do echo $i.trs; done`; \ > if (target_option=n; case ${target_option-} in ?) ;; *) echo > "am__make_running_with_option: internal error: invalid" "target option > '${target_option-}' specified" >&2; exit 1;; esac; has_opt=no; > sane_makeflags=$MAKEFLAGS; if { if test -z '6'; then false; elif test -n > 'x86_64-pc-linux-gnu'; then true; elif test -n '4.4.1' && test -n > '/build/reproducible-path/crac-2.5.2+dfsg/test_f'; then true; else false; fi; > }; then sane_makeflags=$MFLAGS; else case $MAKEFLAGS in *\\[\ \ ]*) bs=\\; > sane_makeflags=`printf '%s\n' "$MAKEFLAGS" | sed "s/$bs$bs[$bs $bs > ]*//g"`;; esac; fi; skip_next=no; strip_trailopt () { flg=`printf '%s\n' > "$flg" | sed "s/$1.*$//"`; }; for flg in $sane_makeflags; do test $skip_next > = yes && { skip_next=no; continue; }; case $flg in *=*|--*) continue;; -*I) > strip_trailopt 'I'; skip_next=yes;; -*I?*) strip_trailopt 'I';; -*O) > strip_trailopt 'O'; skip_next=yes;; -*O?*) strip_trailopt 'O';; -*l) > strip_trailopt 'l'; skip_next=yes;; -*l?*) strip_trailopt 'l';; -[dEDm]) > skip_next=yes;; -[JT]) skip_next=yes;; esac; case $flg in *$target_option*) > has_opt=yes; break;; esac; done; test $has_opt = yes); then :; else \ > rm -f $redo_logs && rm -f $redo_results || exit 1; \ > fi; \ > fi; \ > if test -n "$am__remaking_logs"; then \ > echo "fatal: making test-suite.log: possible infinite" \ > "recursion detected" >&2; \ > elif test -n "$redo_logs"; then \ > am__remaking_logs=yes make $redo_logs; \ > fi; \ > if (target_option=n; case ${target_option-} in ?) ;; *) echo > "am__make_running_with_option: internal error: invalid" "target option > '${target_option-}' specified" >&2; exit 1;; esac; has_opt=no; > sane_makeflags=$MAKEFLAGS; if { if test -z '6'; then false; elif test -n > 'x86_64-pc-linux-gnu'; then true; elif test -n '4.4.1' && test -n > '/build/reproducible-path/crac-2.5.2+dfsg/test_f'; then true; else false; fi; > }; then sane_makeflags=$MFLAGS; else case $MAKEFLAGS in *\\[\ \ ]*) bs=\\; > sane_makeflags=`printf '%s\n' "$MAKEFLAGS" | sed "s/$bs$bs[$bs $bs > ]*//g"`;; esac; fi; skip_next=no; strip_trailopt () { flg=`printf '%s\n' > "$flg" | sed "s/$1.*$//"`; }; for flg in $sane_makeflags; do test $skip_next > = yes && { skip_next=no; continue; }; case $flg in *=*|--*) continue;; -*I) > strip_trailopt 'I'; skip_next=yes;; -*I?*) strip_trailopt 'I';; -*O) > strip_trailopt 'O'; skip_next=yes;; -*O?*) strip_trailopt 'O';; -*l) > strip_trailopt 'l'; skip_next=yes;; -*l?*) strip_trailopt 'l';; -[dEDm]) > skip_next=yes;; -[JT]) skip_next=yes;; esac; case $flg in *$target_option*) > has_opt=yes; break;; esac; done; test $has_opt = yes); then :; else \ > st=0; \ > errmsg="fatal: making test-suite.log: failed to create"; \ > for i in $redo_bases; do \ > test -f $i.trs && test -r $i.trs \ > || { echo "$errmsg $i.trs" >&2; st=1; }; \ > test -f $i.log && test -r $i.log \ > || { echo "$errmsg $i.log" >&2; st=1; }; \ > done; \ > test $st -eq 0 || exit 1; \ > fi > case $- in *e*) set +e;; esac; { mgn= red= grn= lgn= blu= brg= std=; > am__color_tests=no; if test "X" = Xno; then am__color_tests=no; elif test "X" > = Xalways; then am__color_tests=yes; elif test "X$TERM" != Xdumb && { test -t > 1; } 2>/dev/null; then am__color_tests=yes; fi; if test $am__color_tests = > yes; then red='[0;31m'; grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; > mgn='[0;35m'; brg='[1m'; std='[m'; fi; }; bases='index_genomes.sh.log > launch_sg.sh.log test_index.sh.log'; bases=`for i in $bases; do echo $i; done > | sed 's/\.log$//'`; bases=`echo $bases`; \ > ws='[ ]'; \ > results=`for b in $bases; do echo $b.trs; done`; \ > test -n "$results" || results=/dev/null; \ > all=` grep "^$ws*:test-result:" $results | wc -l`; \ > pass=` grep "^$ws*:test-result:$ws*PASS" $results | wc -l`; \ > fail=` grep "^$ws*:test-result:$ws*FAIL" $results | wc -l`; \ > skip=` grep "^$ws*:test-result:$ws*SKIP" $results | wc -l`; \ > xfail=`grep "^$ws*:test-result:$ws*XFAIL" $results | wc -l`; \ > xpass=`grep "^$ws*:test-result:$ws*XPASS" $results | wc -l`; \ > error=`grep "^$ws*:test-result:$ws*ERROR" $results | wc -l`; \ > if test `expr $fail + $xpass + $error` -eq 0; then \ > success=true; \ > else \ > success=false; \ > fi; \ > br='==================='; br=$br$br$br$br; \ > result_count () \ > { \ > if test x"$1" = x"--maybe-color"; then \ > maybe_colorize=yes; \ > elif test x"$1" = x"--no-color"; then \ > maybe_colorize=no; \ > else \ > echo "test-suite.log: invalid 'result_count' usage" >&2; exit 4; \ > fi; \ > shift; \ > desc=$1 count=$2; \ > if test $maybe_colorize = yes && test $count -gt 0; then \ > color_start=$3 color_end=$std; \ > else \ > color_start= color_end=; \ > fi; \ > echo "${color_start}# $desc $count${color_end}"; \ > }; \ > create_testsuite_report () \ > { \ > result_count $1 "TOTAL:" $all "$brg"; \ > result_count $1 "PASS: " $pass "$grn"; \ > result_count $1 "SKIP: " $skip "$blu"; \ > result_count $1 "XFAIL:" $xfail "$lgn"; \ > result_count $1 "FAIL: " $fail "$red"; \ > result_count $1 "XPASS:" $xpass "$red"; \ > result_count $1 "ERROR:" $error "$mgn"; \ > }; \ > output_system_information () \ > { \ > echo; \ > { uname -a | mawk '{ \ > printf "System information (uname -a):"; \ > for (i = 1; i < NF; ++i) \ > { \ > if (i != 2) \ > printf " %s", $i; \ > } \ > printf "\n"; \ > }'; } 2>&1; \ > if test -r /etc/os-release; then \ > echo "Distribution information (/etc/os-release):"; \ > sed 8q /etc/os-release; \ > elif test -r /etc/issue; then \ > echo "Distribution information (/etc/issue):"; \ > cat /etc/issue; \ > fi; \ > }; \ > please_report () \ > { \ > echo "Some test(s) failed. Please report this to > crac-b...@lists.gforge.inria.fr,"; \ > echo "together with the test-suite.log file (gzipped) and your system"; \ > echo "information. Thanks."; \ > }; \ > { \ > echo "crac 2.5.2: test_f/test-suite.log" | \ > { sed 's/.*/ & /;h;s/./=/g;p;x;s/ *$//;p;g' && echo; }; > \ > create_testsuite_report --no-color; \ > output_system_information; \ > echo; \ > echo ".. contents:: :depth: 2"; \ > echo; \ > for b in $bases; do echo $b; done \ > | mawk ' function fatal(msg) { print "fatal: making test-suite.log: " msg > | "cat >&2"; exit 1; } function rst_section(header) { print header; len = > length(header); for (i = 1; i <= len; i = i + 1) printf "="; printf "\n\n"; } > { copy_in_global_log = 1; global_test_result = "RUN"; while ((rc = (getline > line < ($0 ".trs"))) != 0) { if (rc < 0) fatal("failed to read from " $0 > ".trs"); if (line ~ /^[ ]*:global-test-result:[ ]*/) { sub("^[ > ]*:global-test-result:[ ]*", "", line); sub("[ ]*$", "", line); > global_test_result = line; } else if (line ~ /^[ > ]*:copy-in-global-log:[ ]*[nN][oO]/) copy_in_global_log = 0; }; if > (copy_in_global_log) { rst_section(global_test_result ": " $0); while ((rc = > (getline line < ($0 ".log"))) != 0) { if (rc < 0) fatal("failed to read from > " $0 ".log"); print line; }; printf "\n"; }; close ($0 ".trs"); close ($0 > ".log"); }'; \ > } >test-suite.log.tmp || exit 1; \ > mv test-suite.log.tmp test-suite.log; \ > if $success; then \ > col="$grn"; \ > else \ > col="$red"; \ > test x"$VERBOSE" = x || cat test-suite.log; \ > fi; \ > echo "${col}$br${std}"; \ > echo "${col}Testsuite summary"' for crac 2.5.2'"${std}"; \ > echo "${col}$br${std}"; \ > create_testsuite_report --maybe-color; \ > echo "$col$br$std"; \ > if $success; then :; else \ > echo "${col}See test_f/test-suite.log for debugging.${std}";\ > if test -n "crac-b...@lists.gforge.inria.fr"; then \ > please_report | sed -e "s/^/${col}/" -e s/'$'/"${std}"/; \ > fi; \ > echo "$col$br$std"; \ > fi; \ > $success || exit 1 > ======================================= > crac 2.5.2: test_f/test-suite.log > ======================================= > > # TOTAL: 3 > # PASS: 2 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 > > System information (uname -a): Linux 6.1.0-32-cloud-amd64 #1 SMP > PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 > Distribution information (/etc/os-release): > PRETTY_NAME="Debian GNU/Linux trixie/sid" > NAME="Debian GNU/Linux" > VERSION_CODENAME=trixie > ID=debian > HOME_URL="https://www.debian.org/"; > SUPPORT_URL="https://www.debian.org/support"; > BUG_REPORT_URL="https://bugs.debian.org/"; > > .. contents:: :depth: 2 > > FAIL: launch_sg.sh > ================== > > Launching ' ../../src/crac -i ../../test_f/causes/genome -r snp.fa -k 22 > --deep-snv --nb-nucleotides-snv-comparison 3 -o ../../test_f/causes/snp.sam > --detailed-sam --use-x-in-cigar' > Cannot open index > ==> ../../test_f/causes/snp.fa.tap > > Launching ' ../../src/crac -i ../../test_f/causes/genome -r biotag.fa -k 22 > -o ../../test_f/causes/biotag.sam --detailed-sam --use-x-in-cigar' > Cannot open index > ==> ../../test_f/causes/biotag.fa.tap > > Launching ' ../../src/crac -i ../../test_f/splices_adjust/genome -r splice.fa > -k 22 -o ../../test_f/splices_adjust/splice.sam --detailed-sam' > Cannot open index > ==> ../../test_f/splices_adjust/splice.tap > > Launching ' ../../src/crac -i ../../test_f/cigar/genome -r reads_k18.fasta -k > 18 -o ../../test_f/cigar/consistency2.sam' > Cannot open index > ==> ../../test_f/cigar/consistency2.tap > > Launching ' ../../src/crac -i ../../test_f/cigar/genome -r reads.fasta -k 22 > -o ../../test_f/cigar/consistency.sam --detailed-sam --reads-index GKARRAYS > --use-x-in-cigar --min-chimera-score 0' > Cannot open index > ==> ../../test_f/cigar/consistency.tap > > Launching ' ../../src/crac -i ../../test_f/cigar/genome -r reads_sam1.fasta > reads_sam2.fasta -k 10 -o ../../test_f/cigar/consistency3.sam > --treat-multiple 100 --use-x-in-cigar' > Cannot open index > ==> ../../test_f/cigar/consistency3.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18180-genome -r > bug-18180-read.fa --detailed-sam --emt -k 18 -o > ../../test_f/bug/bug-18180.sam' > Warning: Running CRAC--emt with k=18 which means that it only maps the first > located kmer of length 18 for each read > Cannot open index > ==> ../../test_f/bug/bug-18180.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-2015-12-08-genome -r > bug-2015-12-08-read1.fa bug-2015-12-08-read2.fa -k 22 -o > ../../test_f/bug/bug-2015-12-08.sam --detailed-sam --reads-index GKARRAYS' > Cannot open index > ==> ../../test_f/bug/bug-2015-12-08.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18568-genome -r > bug-18568-read.fa -k 22 -o ../../test_f/bug/bug-18568.sam --detailed-sam > --reads-index GKARRAYS' > Cannot open index > ==> ../../test_f/bug/bug-18568.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18522-genome -r > bug-18522-read.fa -k 10 -o ../../test_f/bug/bug-18522.sam --treat-multiple 2' > Cannot open index > ==> ../../test_f/bug/bug-18522.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18435-genome -r > bug-18435-read.fa -k 22 -o ../../test_f/bug/bug-18435.sam' > Cannot open index > ==> ../../test_f/bug/bug-18435.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15649-genome -r > bug-15649-read.fa --detailed-sam -k 22 -o ../../test_f/bug/bug-15649.sam' > Cannot open index > ==> ../../test_f/bug/bug-15649.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-16581-genome -r > bug-16581-read.fq -m 25 -k 22 -o ../../test_f/bug/bug-16581.sam' > Cannot open index > ==> ../../test_f/bug/bug-16581.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15605-genome -r > bug-15605-read.fa -k 22 -o ../../test_f/bug/bug-15605.sam --detailed-sam' > Cannot open index > ==> ../../test_f/bug/bug-15605.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-17749-genome -r > bug-17749-read.fa -k 22 -o ../../test_f/bug/bug-17749.sam --max-splice-length > 100 --max-extension-length 2 --min-chimera-score 0' > Cannot open index > ==> ../../test_f/bug/bug-17749.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-16403-genome -r > bug-16403-read.fa -k 20 -o ../../test_f/bug/bug-16931.sam' > Cannot open index > ==> ../../test_f/bug/bug-16931.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15649-genome-2 -r > bug-15649-read.fa --detailed-sam -k 22 -o ../../test_f/bug/bug-15649-2.sam' > Cannot open index > ==> ../../test_f/bug/bug-15649-2.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-17175-genome -r > bug-17175-read.fa --detailed-sam -k 22 -o ../../test_f/bug/bug-17175.sam > --use-x-in-cigar' > Cannot open index > ==> ../../test_f/bug/bug-17175.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15672-genome -r > bug-15672-read.fa -k 22 -o ../../test_f/bug/bug-15672.sam --detailed-sam' > Cannot open index > ==> ../../test_f/bug/bug-15672.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15630-genome -r > bug-15630-read.fa --detailed-sam -k 18 -o ../../test_f/bug/bug-15630.sam' > Cannot open index > ==> ../../test_f/bug/bug-15630.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18409-genome -r > bug-18409-read.fa --detailed-sam -k 22 -o /dev/stdout | tr ';' '\n'' > Cannot open index > ==> ./bug-18409.tap > > > Launching ' ../../src/crac -i ../../test_f/bug/bug-16502-genome -r > bug-16502-read.fa -k 22 -o ../../test_f/bug/bug-16502.sam --reads-index > GKARRAYS' > Cannot open index > ==> ../../test_f/bug/bug-16502.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18524-genome -r > bug-18524-read.fa -k 22 -o ../../test_f/bug/bug-18524.sam --detailed-sam' > Cannot open index > ==> ../../test_f/bug/bug-18524.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-case-sensitive-genome -r > bug-case-sensitive-read.fa -k 12 -o ../../test_f/bug/bug-case-sensitive.sam > --detailed-sam' > Cannot open index > ==> ../../test_f/bug/bug-case-sensitive.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15677-genome -r > bug-15677-read.fa -k 22 -o ../../test_f/bug/bug-15677.sam' > Cannot open index > ==> ../../test_f/bug/bug-15677.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15847-genome -r > bug-15847-read.fa -k 22 --treat-multiple 36 --detailed-sam -o > ../../test_f/bug/bug-15847.sam' > Cannot open index > ==> ../../test_f/bug/bug-15847.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-18793-genome -r > bug-18793-read.fa -k 22 -o ../../test_f/bug/bug-18793.sam --detailed-sam > --reads-index GKARRAYS' > Cannot open index > ==> ../../test_f/bug/bug-18793.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15646-genome -r > bug-15646-read.fa --detailed-sam -k 22 -o ../../test_f/bug/bug-15646.sam' > Cannot open index > ==> ../../test_f/bug/bug-15646.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15639-genome -r > bug-15639-read.fa -k 22 -o ../../test_f/bug/bug-15639.sam' > Cannot open index > ==> ../../test_f/bug/bug-15639.tap > > Launching ' ../../src/crac -i ../../test_f/bug/bug-15605_2-genome -r > bug-15605_2-read.fa -k 22 -o ../../test_f/bug/bug-15605_2.sam --detailed-sam' > Cannot open index > ==> ../../test_f/bug/bug-15605_2.tap > > FAIL launch_sg.sh (exit status: 1) > > ============================================================================ > Testsuite summary for crac 2.5.2 > ============================================================================ > # TOTAL: 3 > # PASS: 2 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 > ============================================================================ > See test_f/test-suite.log for debugging. > Some test(s) failed. Please report this to crac-b...@lists.gforge.inria.fr, > together with the test-suite.log file (gzipped) and your system > information. Thanks. > ============================================================================ > make[6]: *** [Makefile:805: test-suite.log] Error 1 shuffle=reverse > make[6]: Leaving directory '/build/reproducible-path/crac-2.5.2+dfsg/test_f' > make[5]: *** [Makefile:940: check-TESTS] Error 2 shuffle=reverse > make[5]: Leaving directory '/build/reproducible-path/crac-2.5.2+dfsg/test_f' > make[4]: *** [Makefile:1050: check-am] Error 2 shuffle=reverse > make[4]: Leaving directory '/build/reproducible-path/crac-2.5.2+dfsg/test_f' > make[3]: *** [Makefile:698: check-recursive] Error 1 shuffle=reverse > make[3]: Leaving directory '/build/reproducible-path/crac-2.5.2+dfsg/test_f' > make[2]: *** [Makefile:542: check-recursive] Error 1 shuffle=reverse > make[2]: Leaving directory '/build/reproducible-path/crac-2.5.2+dfsg' > dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 > returned exit code 2 The full build log is available from: http://qa-logs.debian.net/2025/05/05/shuffle/reverse/crac_2.5.2+dfsg-6_unstable_reverse.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects
