Bug#1095471: minc-tools: FTBFS with NetCDF 4.9.3

Bas Couwenberg Sat, 08 Feb 2025 02:09:20 -0800

Source: minc-tools
Version: 2.3.00+dfsg-11
Severity: important
Tags: upstream ftbfs
User: debian-...@lists.debian.org


Dear Maintainer,

Your package FBTFS with NetCDF 4.9.3 from experimental:

 /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c:481:49: error: 
'_FillValue' undeclared (first use in this function); did you mean 
'NC_FillValue'?
   481 |                 nc_status = 
ncattinq(ncid,varid,_FillValue,&att.type,&att.len);
       |                                                 ^~~~~~~~~~
       |                                                 NC_FillValue
 /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c:481:49: note: each 
undeclared identifier is reported only once for each function it appears in

The full buildlog is attached.

Kind Regards,

Bas

dpkg-checkbuilddeps: error: Unmet build dependencies: libminc-dev libnifti2-dev 
libnetcdf-dev (>= 1:4.9.3)
[1;33mW: Unmet build-dependency in source[0m
dh clean
   dh_auto_clean
   dh_clean
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building minc-tools using existing 
./minc-tools_2.3.00+dfsg.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building minc-tools in 
minc-tools_2.3.00+dfsg-11.1.debian.tar.xz
dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-11.1.dsc
[0mI: Generated dsc will be overwritten by build result; not generating 
changes file[0m
I: Copying COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.271012
I: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow 
/var/cache/pbuilder/build/cow.271012
I: removed stale ilistfile /var/cache/pbuilder/build/cow.271012/.ilist
I: forking: chroot /var/cache/pbuilder/build/cow.271012 cowdancer-ilistcreate 
/.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a 
-links +1 -print0 \) | xargs -0 stat --format '%d %i ''
I: Invoking pbuilder
I: forking: pbuilder build --debbuildopts  --debbuildopts  --buildplace 
/var/cache/pbuilder/build/cow.271012 --buildresult .. --mirror 
http://ftp.nl.debian.org/debian/ --distribution sid --no-targz 
--internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.271012 cow-shell' 
/home/bas/tmp/debian/minc-tools_2.3.00+dfsg-11.1.dsc
[0mI: Running in no-targz mode[0m
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Sat Feb  8 10:59:06 CET 2025[0m
[0mI: pbuilder-time-stamp: 1739008746[0m
[0mI: copying local configuration[0m
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage 
for details.[0m
[0mI: mounting /proc filesystem[0m
[0mI: mounting /sys filesystem[0m
[0mI: creating /{dev,run}/shm[0m
[0mI: mounting /dev/pts filesystem[0m
[0mI: redirecting /dev/ptmx to /dev/pts/ptmx[0m
[0mI: policy-rc.d already exists[0m
[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [/home/bas/tmp/debian/minc-tools_2.3.00+dfsg-11.1.dsc][0m
[0mI: copying [/home/bas/tmp/debian/minc-tools_2.3.00+dfsg.orig.tar.gz][0m
[0mI: copying 
[/home/bas/tmp/debian/minc-tools_2.3.00+dfsg-11.1.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package 
(minc-tools_2.3.00+dfsg-11.1.dsc)
dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg
dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz
dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-11.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 01_mincedit-sensible-viewer.diff
dpkg-source: info: applying build-with-libnifti
dpkg-source: info: applying hdf5-1.10-support.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying fix_manpages.patch
dpkg-source: info: applying fix-gcc10-build.patch
dpkg-source: info: applying mnc2nii-use-size-t.patch
[0mI: Not using root during the build.[0m
[0mI: Installing the build-deps[0m
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by 
pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, 
libnifti2-dev, libnetcdf-dev (>= 1:4.9.3), zlib1g-dev, texlive-latex-base, 
libhdf5-dev, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in 
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 17244 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring 
anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on bison; however:
  Package bison is not installed.
 pbuilder-satisfydepends-dummy depends on flex; however:
  Package flex is not installed.
 pbuilder-satisfydepends-dummy depends on libminc-dev; however:
  Package libminc-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libnifti2-dev; however:
  Package libnifti2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libnetcdf-dev (>= 1:4.9.3); however:
  Package libnetcdf-dev is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
  Package texlive-latex-base is not installed.
 pbuilder-satisfydepends-dummy depends on libhdf5-dev; however:
  Package libhdf5-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper; however:
  Package debhelper is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version 
(0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} 
bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} 
dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} 
fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} 
gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} 
libarchive13t64{a} libbrotli1{a} libcairo2{a} libcurl4t64{a} 
libdebhelper-perl{a} libelf1t64{a} libexpat1{a} 
libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} 
libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libharfbuzz0b{a} 
libice6{a} libicu72{a} libjsoncpp26{a} libkpathsea6{a} libldap2{a} 
libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libnghttp2-14{a} libnifti2-2{a} 
libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} 
libniftiio2t64{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} 
libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} 
libptexenc1{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} 
libsm6{a} libssh2-1t64{a} libsynctex2{a} libtasn1-6{a} libteckit0{a} 
libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} 
libuchardet0{a} libuv1t64{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} 
libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} 
libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libznz-dev{a} 
libznz3{a} libzzip-0-13t64{a} m4{a} man-db{a} po-debconf{a} procps{a} 
t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} 
texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl 
libfl-dev libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl 
libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults 
lmodern lynx psmisc publicsuffix shared-mime-info wget x11-utils 
x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/88.2 MB of archives. After unpacking 281 MB will be used.
The following packages have unmet dependencies:
 pbuilder-satisfydepends-dummy : Depends: libminc-dev but it is not installable
                                 Depends: libnetcdf-dev (>= 1:4.9.3) but it is 
not installable
                                 Depends: libhdf5-dev but it is not installable
The following actions will resolve these dependencies:

      Remove the following packages:                            
1)      libcom-err2t64 [1.47.0-2.3+b1 (now)]                    

      Install the following packages:                           
2)      comerr-dev [2.1-1.47.2-1 (unstable)]                    
3)      hdf5-helpers [1.14.5+repack-3 (unstable)]               
4)      icu-devtools [72.1-6 (unstable)]                        
5)      krb5-multidev [1.21.3-4 (unstable)]                     
6)      libaec-dev [1.1.3-1+b1 (unstable)]                      
7)      libaec0 [1.1.3-1+b1 (unstable)]                         
8)      libbrotli-dev [1.1.0-2+b6 (unstable)]                   
9)      libcom-err2 [1.47.2-1 (unstable)]                       
10)     libcurl3t64-gnutls [8.11.1-1+b1 (unstable)]             
11)     libcurl4-gnutls-dev [8.11.1-1+b1 (unstable)]            
12)     libevent-2.1-7t64 [2.1.12-stable-10+b1 (unstable)]      
13)     libgfortran5 [14.2.0-16 (unstable)]                     
14)     libgmp-dev [2:6.3.0+dfsg-3 (unstable)]                  
15)     libgnutls-dane0t64 [3.8.8-2 (unstable)]                 
16)     libgnutls-openssl27t64 [3.8.8-2 (unstable)]             
17)     libgnutls28-dev [3.8.8-2 (unstable)]                    
18)     libgssrpc4t64 [1.21.3-4 (unstable)]                     
19)     libhdf5-310 [1.14.5+repack-3 (unstable)]                
20)     libhdf5-cpp-310 [1.14.5+repack-3 (unstable)]            
21)     libhdf5-dev [1.14.5+repack-3 (unstable)]                
22)     libhdf5-fortran-310 [1.14.5+repack-3 (unstable)]        
23)     libhdf5-hl-310 [1.14.5+repack-3 (unstable)]             
24)     libhdf5-hl-cpp-310 [1.14.5+repack-3 (unstable)]         
25)     libhdf5-hl-fortran-310 [1.14.5+repack-3 (unstable)]     
26)     libicu-dev [72.1-6 (unstable)]                          
27)     libidn2-dev [2.3.7-2+b1 (unstable)]                     
28)     libjpeg62-turbo [1:2.1.5-3+b1 (unstable)]               
29)     libjpeg62-turbo-dev [1:2.1.5-3+b1 (unstable)]           
30)     libkadm5clnt-mit12 [1.21.3-4 (unstable)]                
31)     libkadm5srv-mit12 [1.21.3-4 (unstable)]                 
32)     libkdb5-10t64 [1.21.3-4 (unstable)]                     
33)     libkrb5-dev [1.21.3-4 (unstable)]                       
34)     libldap-dev [2.6.9+dfsg-1 (unstable)]                   
35)     libminc-dev [2.4.06-2.1+b3 (unstable)]                  
36)     libminc2-5.3.0t64 [2.4.06-2.1+b3 (unstable)]            
37)     libnetcdf-dev [1:4.9.3-1~exp1 (unstable-rebuild)]       
38)     libnetcdf19t64 [1:4.9.2-7+b1 (unstable)]                
39)     libnetcdf22 [1:4.9.3-1~exp1 (unstable-rebuild)]         
40)     libnghttp2-dev [1.64.0-1 (unstable)]                    
41)     libnghttp3-9 [1.6.0-2 (unstable)]                       
42)     libnghttp3-dev [1.6.0-2 (unstable)]                     
43)     libngtcp2-16 [1.9.1-1 (unstable)]                       
44)     libngtcp2-crypto-gnutls-dev [1.9.1-1 (unstable)]        
45)     libngtcp2-crypto-gnutls8 [1.9.1-1 (unstable)]           
46)     libngtcp2-dev [1.9.1-1 (unstable)]                      
47)     libp11-kit-dev [0.25.5-3 (unstable)]                    
48)     libpkgconf3 [1.8.1-4 (unstable)]                        
49)     libpsl-dev [0.21.2-1.1+b1 (unstable)]                   
50)     librtmp-dev [2.4+20151223.gitfa8646d.1-2+b5 (unstable)] 
51)     libssh2-1-dev [1.11.1-1 (unstable)]                     
52)     libssl-dev [3.4.0-2 (unstable)]                         
53)     libsz2 [1.1.3-1+b1 (unstable)]                          
54)     libtasn1-6-dev [4.19.0-3+b3 (unstable)]                 
55)     libunbound8 [1.22.0-1+b1 (unstable)]                    
56)     libxml2-dev [2.12.7+dfsg+really2.9.14-0.2+b1 (unstable)]
57)     libzstd-dev [1.5.6+dfsg-2 (unstable)]                   
58)     nettle-dev [3.10-1+b1 (unstable)]                       
59)     pkgconf [1.8.1-4 (unstable)]                            
60)     pkgconf-bin [1.8.1-4 (unstable)]                        



The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} 
bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} 
dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} 
fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} 
gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} 
intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} 
libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} 
libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} 
libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} 
libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} 
libfreetype6{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} 
libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} 
libgnutls30t64{a} libgraphite2-3{a} libgssrpc4t64{a} libharfbuzz0b{a} 
libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} 
libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libice6{a} 
libicu-dev{a} libicu72{a} libidn2-dev{a} libjpeg62-turbo{a} 
libjpeg62-turbo-dev{a} libjsoncpp26{a} libkadm5clnt-mit12{a} 
libkadm5srv-mit12{a} libkdb5-10t64{a} libkpathsea6{a} libkrb5-dev{a} 
libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libminc-dev{a} 
libminc2-5.3.0t64{a} libmpfi0{a} libnetcdf-dev{a} libnetcdf19t64{a} 
libnetcdf22{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} 
libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} 
libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnifti2-2{a} libnifti2-dev{a} 
libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2t64{a} 
libp11-kit-dev{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} 
libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} 
libpsl-dev{a} libpsl5t64{a} libptexenc1{a} librhash1{a} librtmp-dev{a} 
librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1-dev{a} 
libssh2-1t64{a} libssl-dev{a} libsynctex2{a} libsz2{a} libtasn1-6{a} 
libtasn1-6-dev{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} 
libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} 
libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} 
libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} 
libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libznz-dev{a} 
libznz3{a} libzstd-dev{a} libzzip-0-13t64{a} m4{a} man-db{a} nettle-dev{a} 
pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} t1utils{a} tex-common{a} 
texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} 
xdg-utils{a} zlib1g-dev{a} 
The following packages will be REMOVED:
  libcom-err2t64{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl 
libfl-dev libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl 
libnet-dbus-perl libsasl2-modules libtasn1-doc libx11-protocol-perl 
linux-sysctl-defaults lmodern lynx psmisc publicsuffix shared-mime-info wget 
x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 166 newly installed, 1 to remove and 0 not upgraded.
Need to get 0 B/119 MB of archives. After unpacking 409 MB will be used.
Writing extended state information...
Preconfiguring packages ...
dpkg: libcom-err2t64:amd64: dependency problems, but removing anyway as you 
requested:
 libss2t64:amd64 depends on libcom-err2t64 (>= 1.43.9).
 libkrb5-3:amd64 depends on libcom-err2 (>= 1.43.9); however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.
 libgssapi-krb5-2:amd64 depends on libcom-err2 (>= 1.43.9); however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.
 libcomerr2:amd64 depends on libcom-err2; however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.
 e2fsprogs depends on libcom-err2 (>= 1.43.9); however:
  Package libcom-err2 is not installed.
  Package libcom-err2t64:amd64 which provides libcom-err2 is to be removed.

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Preparing to unpack .../000-libcom-err2_1.47.2-1_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../001-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package flex.
Preparing to unpack .../002-flex_2.6.4-8.2+b4_amd64.deb ...
Unpacking flex (2.6.4-8.2+b4) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../003-libproc2-0_2%3a4.0.4-7_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-7) ...
Selecting previously unselected package procps.
Preparing to unpack .../004-procps_2%3a4.0.4-7_amd64.deb ...
Unpacking procps (2:4.0.4-7) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_amd64.deb ...
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-uc  && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" 
dpkg-genchanges -S  > ../minc-tools_2.3.00+dfsg-11.1_source.changes[0m
dpkg-buildpackage: info: source package minc-tools
dpkg-buildpackage: info: source version 2.3.00+dfsg-11.1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Bas Couwenberg <sebas...@debian.org>
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dpkg-buildpackage: info: host architecture amd64
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dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building minc-tools using existing 
./minc-tools_2.3.00+dfsg.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building minc-tools in 
minc-tools_2.3.00+dfsg-11.1.debian.tar.xz
dpkg-source: info: building minc-tools in minc-tools_2.3.00+dfsg-11.1.dsc
 debian/rules binary
dh binary
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CMake Warning (dev) at CMakeLists.txt:6 (PROJECT):
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-I/build/minc-tools-2.3.00+dfsg/progs/Proglib 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 
-Werror=implicit-function-declaration 
-ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT 
progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -MF 
CMakeFiles/mincgen.dir/ncgenyy.c.o.d -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c 
/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
-I/usr/lib/x86_64-linux-gnu/include 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 
-I/build/minc-tools-2.3.00+dfsg/progs/Proglib 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
-I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 
-Werror=implicit-function-declaration 
-ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 
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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT 
progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -MF 
CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o 
CMakeFiles/minccalc.dir/minccalc/eval.c.o -c 
/build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c
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In file included from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:14:
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: In function 'yyparse':
[ 21%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
-I/usr/lib/x86_64-linux-gnu/include 
-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 
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-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
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/build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c
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/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:278:52: error: 
'_FillValue' undeclared (first use in this function); did you mean 
'NC_FillValue'?
  278 |                        if (STREQ(atts[natts].name, _FillValue) &&
      |                                                    ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgen.h:13:36: note: in definition 
of macro 'STREQ'
   13 | #define STREQ(a, b)     (*(a) == *(b) && strcmp((a), (b)) == 0)
      |                                    ^
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:278:52: note: each 
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  278 |                        if (STREQ(atts[natts].name, _FillValue) &&
      |                                                    ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgen.h:13:36: note: in definition 
of macro 'STREQ'
   13 | #define STREQ(a, b)     (*(a) == *(b) && strcmp((a), (b)) == 0)
      |                                    ^
cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
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-I/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 
-I/build/minc-tools-2.3.00+dfsg/progs/minccalc 
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CMakeFiles/minccalc.dir/minccalc/ident.c.o -c 
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-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o 
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cd /build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc 
-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 
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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro 
-Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic 
-Wl,--dependency-file=CMakeFiles/minccalc.dir/link.d 
CMakeFiles/minccalc.dir/minccalc/minccalc.c.o 
CMakeFiles/minccalc.dir/minccalc/eval.c.o 
CMakeFiles/minccalc.dir/minccalc/ident.c.o 
CMakeFiles/minccalc.dir/minccalc/node.c.o 
CMakeFiles/minccalc.dir/minccalc/optim.c.o 
CMakeFiles/minccalc.dir/minccalc/scalar.c.o 
CMakeFiles/minccalc.dir/minccalc/sym.c.o 
CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o 
CMakeFiles/minccalc.dir/gram.c.o -o minccalc   -L/usr/lib/x86_64-linux-gnu/lib  
-Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm 
-ldl -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu'
[ 27%] Built target minccalc
make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:169: all] Error 2
make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j11 "INSTALL=install 
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:25: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
[0mI: copying local configuration[0m
[0;31mE: Failed autobuilding of package[0m
[0mI: unmounting dev/ptmx filesystem[0m
[0mI: unmounting dev/pts filesystem[0m
[0mI: unmounting dev/shm filesystem[0m
[0mI: unmounting proc filesystem[0m
[0mI: unmounting sys filesystem[0m
I: Cleaning COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.271012

Bug#1095471: minc-tools: FTBFS with NetCDF 4.9.3

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