Source: brian Version: 2.7.1+ds-2 Severity: normal User: debian-pyt...@lists.debian.org Usertags: python3.13-default
This package failed build from source when test-built against a version of python3-defaults that has 3.13 as the default Python 3 version. To reproduce this issue, build against python3-defaults (python3-all-dev etc.) from Debian experimental. What's new in Python 3.13: https://docs.python.org/3.13/whatsnew/3.13.html Log snippet: # FIXME: May be the deleted tests should be provided in final binary package! # Effectively running the test suite brian2.test() per upstream doc. set -e \ ; cd /<<PKGBUILDDIR>>/build \ ; echo "I: Running Brian unittests using python3.13" \ ; export PYTHONPATH="$( echo /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/*-packages )" \ ; python3.13 -c 'import brian2;exit(not brian2.test())' \ ; rm -rvf "${PYTHONPATH}/brian2/tests/.pytest_cache/" I: Running Brian unittests using python3.13 Running tests in /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2 for targets numpy, cython (excluding long tests) Running Brian version 2.7.1+ds from '/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2' Testing codegen-independent code Resetting to default preferences Running doctests .F.....WARNING The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network. The object was created here (most recent call only): File '<doctest brian2.core.variables.linked_var[1]>', line 1, in <module> G1 = NeuronGroup(10, 'dv/dt = -v / (10*ms) : volt') [brian2.core.base.unused_brian_object] WARNING The object 'neurongroup_1' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network. The object was created here (most recent call only): File '<doctest brian2.core.variables.linked_var[2]>', line 1, in <module> G2 = NeuronGroup(10, 'v : volt (linked)') [brian2.core.base.unused_brian_object] ................WARNING The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network. The object was created here (most recent call only): File '<doctest brian2.synapses.synapses.Synapses.connect[2]>', line 1, in <module> G = NeuronGroup(10, 'dv/dt = -v / tau : 1', threshold='v>1', reset='v=0') [brian2.core.base.unused_brian_object] WARNING The object 'synapses' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network. The object was created here (most recent call only): File '<doctest brian2.synapses.synapses.Synapses.connect[3]>', line 1, in <module> S = Synapses(G, G, 'w:1', on_pre='v+=w') [brian2.core.base.unused_brian_object] ................... [100%] =================================== FAILURES =================================== ______________ [doctest] brian2.codegen.optimisation.reduced_node ______________ 438 terms : list 439 AST nodes. 440 op : AST node 441 Could be `ast.Mult` or `ast.Add`. 442 443 Examples 444 -------- 445 >>> import ast 446 >>> nodes = [ast.Name(id='x'), ast.Name(id='y'), ast.Name(id='z')] 447 >>> ast.dump(reduced_node(nodes, ast.Mult), annotate_fields=False) Expected: "BinOp(BinOp(Name('x'), Mult(), Name('y')), Mult(), Name('z'))" Got: "BinOp(BinOp(Name('x', Load()), Mult(), Name('y', Load())), Mult(), Name('z', Load()))" /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/codegen/optimisation.py:447: DocTestFailure =============================== warnings summary =============================== ../debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path) see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path def pytest_ignore_collect(path, config): ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441: PytestConfigWarning: Unknown config option: timeout self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED ../debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/codegen/optimisation.py::brian2.codegen.optimisation.reduced_node 1 failed, 41 passed, 2 warnings in 12.98s Running tests that do not use code generation ..................................................s..................... [ 32%] ........................................................................ [ 64%] ........................................................................ [ 97%] ...... [100%] =============================== warnings summary =============================== ../debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path) see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path def pytest_ignore_collect(path, config): ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441: PytestConfigWarning: Unknown config option: timeout self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") test_parsing.py::test_substitute_abstract_code_functions test_parsing.py::test_substitute_abstract_code_functions /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/parsing/functions.py:145: DeprecationWarning: Call.__init__ got an unexpected keyword argument 'starargs'. Support for arbitrary keyword arguments is deprecated and will be removed in Python 3.15. return ast.Call( test_parsing.py::test_substitute_abstract_code_functions test_parsing.py::test_substitute_abstract_code_functions /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/parsing/functions.py:145: DeprecationWarning: Call.__init__ got an unexpected keyword argument 'kwargs'. Support for arbitrary keyword arguments is deprecated and will be removed in Python 3.15. return ast.Call( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 221 passed, 1 skipped, 58 deselected, 6 warnings in 74.81s (0:01:14) Running tests for target numpy: .....s....--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () ....--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () .......--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'synapses' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () ...--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'synapses_2' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () .--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'synapses_2' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () ........... [100%] =============================== warnings summary =============================== ../debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path) see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path def pytest_ignore_collect(path, config): ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441: PytestConfigWarning: Unknown config option: timeout self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") test_complex_examples.py::test_cuba test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput_refractory /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/parsing/rendering.py:105: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. vectorisation_idx = ast.Name() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 35 passed, 1 skipped, 244 deselected, 9 warnings in 24.07s Running tests for target cython: .....s...............--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'synapses' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () ...--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'synapses_2' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () .--- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'neurongroup' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () --- Logging error --- Traceback (most recent call last): File "/usr/lib/python3.13/logging/__init__.py", line 1153, in emit stream.write(msg + self.terminator) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^ ValueError: I/O operation on closed file. Call stack: File "<string>", line 1, in <module> import brian2;exit(not brian2.test()) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/tests/__init__.py", line 383, in run pytest.main(argv + additional_args, plugins=[pref_plugin]) == 0 File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175, in main ret: ExitCode | int = config.hook.pytest_cmdline_main(config=config) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330, in pytest_cmdline_main return wrap_session(config, _main) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283, in wrap_session session.exitstatus = doit(config, session) or 0 File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337, in _main config.hook.pytest_runtestloop(session=session) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362, in pytest_runtestloop item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103, in _multicall res = hook_impl.function(*args) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113, in pytest_runtest_protocol runtestprotocol(item, nextitem=nextitem) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132, in runtestprotocol reports.append(call_and_report(item, "call", log)) File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 244, in call_and_report report: TestReport = ihook.pytest_runtest_makereport(item=item, call=call) File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513, in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120, in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 156, in _multicall teardown[0].send(outcome) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py", line 130, in pytest_runtest_makereport reinit_and_delete() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 764, in reinit_and_delete reinit_devices() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/devices/device.py", line 755, in reinit_devices restore_initial_state() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/only.py", line 75, in restore_initial_state gc.collect() File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/core/base.py", line 190, in __del__ logger.warn( File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 490, in warn self._log("WARNING", msg, name_suffix, once) File "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/utils/logger.py", line 424, in _log the_logger.log(LOG_LEVELS[log_level], msg) Message: "The object 'synapses_2' is getting deleted, but was never included in a network. This probably means that you did not store the object reference in a variable, or that the variable was not used to construct the network.\nThe object was created here (most recent call only):\n File '/usr/lib/python3/dist-packages/_pytest/python.py', line 159, in pytest_pyfunc_call\n result = testfunction(**testargs)" Arguments: () ........... [100%] =============================== warnings summary =============================== ../debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17 /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/conftest.py:17: PytestRemovedIn9Warning: The (path: py.path.local) argument is deprecated, please use (collection_path: pathlib.Path) see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path def pytest_ignore_collect(path, config): ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441 /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1441: PytestConfigWarning: Unknown config option: timeout self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") test_complex_examples.py::test_cuba test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput test_poissoninput.py::test_poissoninput_refractory /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.13/dist-packages/brian2/parsing/rendering.py:105: DeprecationWarning: Name.__init__ missing 1 required positional argument: 'id'. This will become an error in Python 3.15. vectorisation_idx = ast.Name() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 35 passed, 1 skipped, 244 deselected, 9 warnings in 272.84s (0:04:32) ERROR: 1/4 test suite(s) did not complete successfully (see above). make[1]: *** [debian/rules:59: override_dh_auto_install] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:32: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-12-25T15:45:21Z If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/1123347/ This bug has been filed at "normal" severity, as we haven't started the transition to add 3.13 as default, yet. This will be raised to RC as soon as that happens, hopefully well before trixie. Thanks, Stefano
