Package: src:libghemical
Version: 3.0.0-4.4
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
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[...]
debian/rules build
dh build --parallel --with autoreconf
dh_update_autotools_config
dh_autoreconf
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:26: warning: 'AM_CONFIG_HEADER': this macro is obsolete.
configure.ac:26: You should use the 'AC_CONFIG_HEADERS' macro instead.
./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from...
aclocal.m4:10887: AM_CONFIG_HEADER is expanded from...
configure.ac:26: the top level
configure.ac:32: warning: 'AM_CONFIG_HEADER': this macro is obsolete.
configure.ac:32: You should use the 'AC_CONFIG_HEADERS' macro instead.
./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from...
aclocal.m4:10887: AM_CONFIG_HEADER is expanded from...
configure.ac:32: the top level
configure.ac:91: warning: The macro 'AC_PROG_LIBTOOL' is obsolete.
configure.ac:91: You should run autoupdate.
aclocal.m4:799: AC_PROG_LIBTOOL is expanded from...
configure.ac:91: the top level
configure.ac:105: warning: The macro 'GLIB_GNU_GETTEXT' is obsolete.
configure.ac:105: You should run autoupdate.
aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from...
aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from...
configure.ac:105: the top level
configure.ac:105: warning: The macro 'AC_TRY_LINK' is obsolete.
configure.ac:105: You should run autoupdate.
./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:697: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
aclocal.m4:73: GLIB_LC_MESSAGES is expanded from...
aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from...
aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from...
configure.ac:105: the top level
configure.ac:105: warning: The macro 'AC_TRY_LINK' is obsolete.
configure.ac:105: You should run autoupdate.
./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:690: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:697: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
lib/m4sugar/m4sh.m4:697: AS_IF is expanded from...
./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from...
./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from...
aclocal.m4:172: GLIB_WITH_NLS is expanded from...
aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from...
aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from...
configure.ac:105: the top level
configure.ac:105: warning: The macro 'AC_TRY_LINK' is obsolete.
configure.ac:105: You should run autoupdate.
./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:697: AS_IF is expanded from...
./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from...
./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from...
aclocal.m4:172: GLIB_WITH_NLS is expanded from...
aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from...
aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from...
configure.ac:105: the top level
configure.ac:105: warning: The macro 'AC_OUTPUT_COMMANDS' is obsolete.
configure.ac:105: You should run autoupdate.
./lib/autoconf/status.m4:1025: AC_OUTPUT_COMMANDS is expanded from...
aclocal.m4:172: GLIB_WITH_NLS is expanded from...
aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from...
aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from...
configure.ac:105: the top level
configure.ac:126: warning: The macro 'AC_TRY_RUN' is obsolete.
configure.ac:126: You should run autoupdate.
./lib/autoconf/general.m4:2995: AC_TRY_RUN is expanded from...
acinclude.m4:10: AM_PATH_SC is expanded from...
configure.ac:126: the top level
configure.ac:126: warning: The macro 'AC_TRY_LINK' is obsolete.
configure.ac:126: You should run autoupdate.
./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from...
acinclude.m4:10: AM_PATH_SC is expanded from...
configure.ac:126: the top level
configure.ac:164: warning: The macro 'AC_PROG_CC_STDC' is obsolete.
configure.ac:164: You should run autoupdate.
./lib/autoconf/c.m4:1669: AC_PROG_CC_STDC is expanded from...
configure.ac:164: the top level
configure.ac:176: warning: The macro 'AC_HEADER_STDC' is obsolete.
configure.ac:176: You should run autoupdate.
./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
configure.ac:176: the top level
configure.ac:86: installing './compile'
configure.ac:42: installing './missing'
/usr/share/automake-1.16/am/ltlibrary.am: warning: 'libghemical.la': linking
libtool libraries using a non-POSIX
/usr/share/automake-1.16/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in
'configure.ac'
src/Makefile.am:1: while processing Libtool library 'libghemical.la'
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-mpqc --enable-mopac7 --disable-sctest
./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=\${prefix}/include --mandir=\${prefix}/share/man
--infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-option-checking --disable-silent-rules
--libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run
--disable-maintainer-mode --disable-dependency-tracking --enable-mpqc
--enable-mopac7 --disable-sctest
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
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checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
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checking whether the C compiler works... yes
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checking SC - version... yes
checking for libmopac7 >= 1.13... yes
Package mpi-cxx was not found in the pkg-config search path.
Perhaps you should add the directory containing `mpi-cxx.pc'
to the PKG_CONFIG_PATH environment variable
Package 'mpi-cxx', required by 'virtual:world', not found
Package mpi-cxx was not found in the pkg-config search path.
Perhaps you should add the directory containing `mpi-cxx.pc'
to the PKG_CONFIG_PATH environment variable
Package 'mpi-cxx', required by 'virtual:world', not found
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checking for egrep... (cached) /usr/bin/grep -E
configure:
build options:
^^^^^^^^^^^^^^
enable MPQC : yes
enable MOPAC7 : yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating libghemical.pc
config.status: creating Makefile
config.status: creating bin/Makefile
config.status: creating bin/amber/Makefile
config.status: creating bin/builder/Makefile
config.status: creating bin/param_mm/Makefile
config.status: creating bin/param_mm/default/Makefile
config.status: creating bin/param_mm/prmfit/Makefile
config.status: creating bin/param_mm/tripos52/Makefile
config.status: creating bin/param_sf/Makefile
config.status: creating bin/param_sf/default/Makefile
config.status: creating po/Makefile.in
config.status: creating src/Makefile
config.status: creating src/libghemicalconfig.h
config.status: creating src/libghemical-features.h
config.status: executing src/libghemicalconfig2.h commands
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
config.status: executing stamp.h commands
config.status: executing po/stamp-it commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make all-am
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
atom.lo atom.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c atom.cpp -fPIC -DPIC -o
.libs/atom.o
atom.cpp:33:44: warning: ISO C++ forbids converting a string constant to
'char*' [-Wwrite-strings]
33 | element element::current_element = element("C");
| ^~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c atom.cpp -o atom.o >/dev/null
2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
bond.lo bond.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c bond.cpp -fPIC -DPIC -o
.libs/bond.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c bond.cpp -o bond.o >/dev/null
2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
constraint.lo constraint.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c constraint.cpp -fPIC
-DPIC -o .libs/constraint.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c constraint.cpp -o constraint.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
model.lo model.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c model.cpp -fPIC -DPIC
-o .libs/model.o
In file included from local_i18n.h:38,
from model.cpp:46:
libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined
102 | #define PACKAGE_NAME "libghemical"
| ^~~~~~~~~~~~
In file included from /usr/include/sc/util/misc/exenv.h:37,
from /usr/include/sc/util/class/class.h:46,
from /usr/include/sc/util/keyval/keyval.h:42,
from eng1_qm_mpqc.h:37,
from eng2_qm_mm.h:38,
from model.cpp:35:
/usr/include/sc/scconfig.h:281:9: note: this is the location of the previous
definition
281 | #define PACKAGE_NAME ""
| ^~~~~~~~~~~~
libghemicalconfig.h:105:9: warning: "PACKAGE_STRING" redefined
105 | #define PACKAGE_STRING "libghemical 3.0.0"
| ^~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:284:9: note: this is the location of the previous
definition
284 | #define PACKAGE_STRING ""
| ^~~~~~~~~~~~~~
libghemicalconfig.h:108:9: warning: "PACKAGE_TARNAME" redefined
108 | #define PACKAGE_TARNAME "libghemical"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:287:9: note: this is the location of the previous
definition
287 | #define PACKAGE_TARNAME ""
| ^~~~~~~~~~~~~~~
libghemicalconfig.h:114:9: warning: "PACKAGE_VERSION" redefined
114 | #define PACKAGE_VERSION "3.0.0"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:293:9: note: this is the location of the previous
definition
293 | #define PACKAGE_VERSION ""
| ^~~~~~~~~~~~~~~
In file included from model.cpp:31:
eng1_qm.h: In member function 'virtual bool
eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)':
eng1_qm.h:128:155: warning: no return statement in function returning non-void
[-Wreturn-type]
128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64,
f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
eng1_qm.h: In member function 'virtual bool
eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)':
eng1_qm.h:129:142: warning: no return statement in function returning non-void
[-Wreturn-type]
129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) {
assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
eng2_qm_mm.h: In member function 'virtual bool
eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64,
bool)':
eng2_qm_mm.h:90:155: warning: no return statement in function returning
non-void [-Wreturn-type]
90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64,
f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
eng2_qm_mm.h: In member function 'virtual bool
eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)':
eng2_qm_mm.h:91:142: warning: no return statement in function returning
non-void [-Wreturn-type]
91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) {
assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
eng2_qm_mm.h: In member function 'virtual bool
eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64,
bool)':
eng2_qm_mm.h:127:155: warning: no return statement in function returning
non-void [-Wreturn-type]
127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64,
f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
eng2_qm_mm.h: In member function 'virtual bool
eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)':
eng2_qm_mm.h:128:142: warning: no return statement in function returning
non-void [-Wreturn-type]
128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) {
assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)':
model.cpp:319:30: warning: control reaches end of non-void function
[-Wreturn-type]
319 | else assertion_failed(__FILE__, __LINE__, "index overflow");
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c model.cpp -o model.o >/dev/null
2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
engine.lo engine.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c engine.cpp -fPIC -DPIC
-o .libs/engine.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c engine.cpp -o engine.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
typerule.lo typerule.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c typerule.cpp -fPIC
-DPIC -o .libs/typerule.o
typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*,
std::ostream*)':
typerule.cpp:172:56: warning: narrowing conversion of 'strlen(((const
char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka
'long unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
172 | i32s tmp1[2] = { strlen(buffer), 0 };
| ~~~~~~^~~~~~~~
typerule.cpp:183:50: warning: writing 1 byte into a region of size 0
[-Wstringop-overflow=]
183 | newring[tmp1[1]] = 0;
| ~~~~~~~~~~~~~~~~~^~~
typerule.cpp:182:84: note: at offset -1 into destination object of size 0
allocated by 'operator new []'
182 | signed char * newring = new signed
char[tmp1[1] + 1];
|
^
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c typerule.cpp -o typerule.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
utility.lo utility.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c utility.cpp -fPIC -DPIC
-o .libs/utility.o
utility.cpp: In function 'void DefineSecondaryStructure(model*)':
utility.cpp:308:42: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
308 | i32s tmp1[2] = { n1, n2 };
| ^~
utility.cpp:309:42: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
309 | i32s tmp2[2] = { n1, n2 + 4 };
| ^~
utility.cpp:349:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
349 | i32s t1a[2] = { n1, n2 - 1 }; i32s
t1b[2] = { n1, n3 };
| ^~
utility.cpp:349:79: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
349 | i32s t1a[2] = { n1, n2 - 1 }; i32s
t1b[2] = { n1, n3 };
|
^~
utility.cpp:352:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] =
{ n1, n2 + 1 };
| ^~
utility.cpp:352:75: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] =
{ n1, n2 + 1 };
|
^~
utility.cpp:355:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
355 | i32s t3a[2] = { n1, n3 - 1 }; i32s
t3b[2] = { n1, n2 };
| ^~
utility.cpp:355:79: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
355 | i32s t3a[2] = { n1, n3 - 1 }; i32s
t3b[2] = { n1, n2 };
|
^~
utility.cpp:358:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] =
{ n1, n3 + 1 };
| ^~
utility.cpp:358:75: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] =
{ n1, n3 + 1 };
|
^~
utility.cpp:361:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] =
{ n1, n3 };
| ^~
utility.cpp:361:75: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] =
{ n1, n3 };
|
^~
utility.cpp:364:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] =
{ n1, n2 };
| ^~
utility.cpp:364:75: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] =
{ n1, n2 };
|
^~
utility.cpp:367:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
367 | i32s t7a[2] = { n1, n2 - 1 }; i32s
t7b[2] = { n1, n3 + 1 };
| ^~
utility.cpp:367:79: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
367 | i32s t7a[2] = { n1, n2 - 1 }; i32s
t7b[2] = { n1, n3 + 1 };
|
^~
utility.cpp:370:49: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
370 | i32s t8a[2] = { n1, n3 - 1 }; i32s
t8b[2] = { n1, n2 + 1 };
| ^~
utility.cpp:370:79: warning: narrowing conversion of 'n1' from 'i32u' {aka
'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing]
370 | i32s t8a[2] = { n1, n3 - 1 }; i32s
t8b[2] = { n1, n2 + 1 };
|
^~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c utility.cpp -o utility.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
chn_info.lo chn_info.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c chn_info.cpp -fPIC
-DPIC -o .libs/chn_info.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c chn_info.cpp -o chn_info.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
seqbuild.lo seqbuild.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqbuild.cpp -fPIC
-DPIC -o .libs/seqbuild.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c seqbuild.cpp -o seqbuild.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
mfinder.lo mfinder.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c mfinder.cpp -fPIC -DPIC
-o .libs/mfinder.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c mfinder.cpp -o mfinder.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
eng1_qm.lo eng1_qm.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eng1_qm.cpp -fPIC -DPIC
-o .libs/eng1_qm.o
In file included from local_i18n.h:38,
from eng1_qm.cpp:27:
libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined
102 | #define PACKAGE_NAME "libghemical"
| ^~~~~~~~~~~~
In file included from /usr/include/sc/util/misc/exenv.h:37,
from /usr/include/sc/util/class/class.h:46,
from /usr/include/sc/util/keyval/keyval.h:42,
from eng1_qm_mpqc.h:37,
from eng1_qm.cpp:24:
/usr/include/sc/scconfig.h:281:9: note: this is the location of the previous
definition
281 | #define PACKAGE_NAME ""
| ^~~~~~~~~~~~
libghemicalconfig.h:105:9: warning: "PACKAGE_STRING" redefined
105 | #define PACKAGE_STRING "libghemical 3.0.0"
| ^~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:284:9: note: this is the location of the previous
definition
284 | #define PACKAGE_STRING ""
| ^~~~~~~~~~~~~~
libghemicalconfig.h:108:9: warning: "PACKAGE_TARNAME" redefined
108 | #define PACKAGE_TARNAME "libghemical"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:287:9: note: this is the location of the previous
definition
287 | #define PACKAGE_TARNAME ""
| ^~~~~~~~~~~~~~~
libghemicalconfig.h:114:9: warning: "PACKAGE_VERSION" redefined
114 | #define PACKAGE_VERSION "3.0.0"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:293:9: note: this is the location of the previous
definition
293 | #define PACKAGE_VERSION ""
| ^~~~~~~~~~~~~~~
In file included from eng1_qm.cpp:22:
eng1_qm.h: In member function 'virtual bool
eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)':
eng1_qm.h:128:155: warning: no return statement in function returning non-void
[-Wreturn-type]
128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64,
f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
eng1_qm.h: In member function 'virtual bool
eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)':
eng1_qm.h:129:142: warning: no return statement in function returning non-void
[-Wreturn-type]
129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) {
assertion_failed(__FILE__, __LINE__, "not yet implemented!"); }
|
^
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eng1_qm.cpp -o eng1_qm.o
>/dev/null 2>&1
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc
-I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2
-I/usr/include/sc -I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o
eng1_qm_mpqc.lo eng1_qm_mpqc.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi
-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc
-I/usr/include/mpi -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c eng1_qm_mpqc.cpp -fPIC
-DPIC -o .libs/eng1_qm_mpqc.o
In file included from local_i18n.h:38,
from eng1_qm_mpqc.cpp:24:
libghemicalconfig.h:102:9: warning: "PACKAGE_NAME" redefined
102 | #define PACKAGE_NAME "libghemical"
| ^~~~~~~~~~~~
In file included from /usr/include/sc/util/misc/exenv.h:37,
from /usr/include/sc/util/class/class.h:46,
from /usr/include/sc/util/keyval/keyval.h:42,
from eng1_qm_mpqc.h:37,
from eng1_qm_mpqc.cpp:22:
/usr/include/sc/scconfig.h:281:9: note: this is the location of the previous
definition
281 | #define PACKAGE_NAME ""
| ^~~~~~~~~~~~
libghemicalconfig.h:105:9: warning: "PACKAGE_STRING" redefined
105 | #define PACKAGE_STRING "libghemical 3.0.0"
| ^~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:284:9: note: this is the location of the previous
definition
284 | #define PACKAGE_STRING ""
| ^~~~~~~~~~~~~~
libghemicalconfig.h:108:9: warning: "PACKAGE_TARNAME" redefined
108 | #define PACKAGE_TARNAME "libghemical"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:287:9: note: this is the location of the previous
definition
287 | #define PACKAGE_TARNAME ""
| ^~~~~~~~~~~~~~~
libghemicalconfig.h:114:9: warning: "PACKAGE_VERSION" redefined
114 | #define PACKAGE_VERSION "3.0.0"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:293:9: note: this is the location of the previous
definition
293 | #define PACKAGE_VERSION ""
| ^~~~~~~~~~~~~~~
In file included from /usr/include/sc/util/group/linkage.h:32,
from /usr/include/sc/math/scmat/linkage.h:34,
from /usr/include/sc/chemistry/qc/scf/linkage.h:37,
from eng1_qm_mpqc.cpp:44:
/usr/include/sc/scconfig.h:281:9: warning: "PACKAGE_NAME" redefined
281 | #define PACKAGE_NAME ""
| ^~~~~~~~~~~~
libghemicalconfig.h:102:9: note: this is the location of the previous definition
102 | #define PACKAGE_NAME "libghemical"
| ^~~~~~~~~~~~
/usr/include/sc/scconfig.h:284:9: warning: "PACKAGE_STRING" redefined
284 | #define PACKAGE_STRING ""
| ^~~~~~~~~~~~~~
libghemicalconfig.h:105:9: note: this is the location of the previous definition
105 | #define PACKAGE_STRING "libghemical 3.0.0"
| ^~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:287:9: warning: "PACKAGE_TARNAME" redefined
287 | #define PACKAGE_TARNAME ""
| ^~~~~~~~~~~~~~~
libghemicalconfig.h:108:9: note: this is the location of the previous definition
108 | #define PACKAGE_TARNAME "libghemical"
| ^~~~~~~~~~~~~~~
/usr/include/sc/scconfig.h:293:9: warning: "PACKAGE_VERSION" redefined
293 | #define PACKAGE_VERSION ""
| ^~~~~~~~~~~~~~~
libghemicalconfig.h:114:9: note: this is the location of the previous definition
114 | #define PACKAGE_VERSION "3.0.0"
| ^~~~~~~~~~~~~~~
In file included from /usr/include/sc/util/group/linkage.h:57:
/usr/include/sc/util/group/memmtmpi.h:38:10: fatal error: mpi.h: No such file
or directory
38 | #include <mpi.h>
| ^~~~~~~
compilation terminated.
make[3]: *** [Makefile:645: eng1_qm_mpqc.lo] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: *** [Makefile:485: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: *** [Makefile:486: all-recursive] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 returned exit code 2
make: *** [debian/rules:10: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202410/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
