Source: ghmm Version: 0.9~rc3-9 User: debian-pyt...@lists.debian.org Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/g/ghmm.html Setting up ghmm (0.9~rc3-9) ... /usr/lib/python3/dist-packages/ghmm/ghmm.py:290: SyntaxWarning: invalid escape sequence '\p' """ Check whether \p emission is admissable (contained in) the domain /usr/lib/python3/dist-packages/ghmm/ghmm.py:1510: SyntaxWarning: invalid escape sequence '\s' stat = re.compile("^ACC\s+(\w+)") /usr/lib/python3/dist-packages/ghmm/ghmm.py:1536: SyntaxWarning: invalid escape sequence '\s' hmmRe = re.compile("^HMM\s*=") /usr/lib/python3/dist-packages/ghmm/ghmm.py:1537: SyntaxWarning: invalid escape sequence '\s' shmmRe = re.compile("^SHMM\s*=") /usr/lib/python3/dist-packages/ghmm/ghmm.py:1538: SyntaxWarning: invalid escape sequence '\s' mvalueRe = re.compile("M\s*=\s*([0-9]+)") /usr/lib/python3/dist-packages/ghmm/ghmm.py:1539: SyntaxWarning: invalid escape sequence '\s' densityvalueRe = re.compile("density\s*=\s*([0-9]+)") /usr/lib/python3/dist-packages/ghmm/ghmm.py:1540: SyntaxWarning: invalid escape sequence '\s' cosvalueRe = re.compile("cos\s*=\s*([0-9]+)") /usr/lib/python3/dist-packages/ghmm/ghmm.py:2096: SyntaxWarning: invalid escape sequence '\s' """ Compute log( P[emissionSequences| model]) using the forward algorithm /usr/lib/python3/dist-packages/ghmm/ghmm.py:2374: SyntaxWarning: invalid escape sequence '\p' """ Compute the Viterbi-path for each sequence in emissionSequences /usr/lib/python3/dist-packages/ghmm/ghmm.py:2473: SyntaxWarning: invalid escape sequence '\p' """ Accessor function for the initial probability \f$\pi_i\f$ """ /usr/lib/python3/dist-packages/ghmm/ghmm.py:2478: SyntaxWarning: invalid escape sequence '\p' """ Accessor function for the initial probability \f$\pi_i\f$. /usr/lib/python3/dist-packages/ghmm/ghmm.py:3323: SyntaxWarning: invalid escape sequence '\p' """ Compute a vector ( log( P[s,l| model]) )_{s} of log-likelihoods of the /usr/lib/python3/dist-packages/ghmm/modhmmer.py:185: SyntaxWarning: invalid escape sequence '\s' self.acc = gotoLine(f,re.compile("^NAME\s+([\w+\s*]+)" ) ).group(1) # NAME as unique model identifier /usr/lib/python3/dist-packages/ghmm/modhmmer.py:192: SyntaxWarning: invalid escape sequence '\s' n = int(gotoLine(f,re.compile("^LENG\s*(\d+)")).group(1)) /usr/lib/python3/dist-packages/ghmm/modhmmer.py:195: SyntaxWarning: invalid escape sequence '\s' m = self.dicType[gotoLine(f,re.compile("^ALPH\s*(\S+)")).group(1)]; /usr/lib/python3/dist-packages/ghmm/modhmmer.py:205: SyntaxWarning: invalid escape sequence '\s' trans = string.split(gotoLine(f,re.compile("^XT([\s\d\S]*)")).group(1)) /usr/lib/python3/dist-packages/ghmm/modhmmer.py:209: SyntaxWarning: invalid escape sequence '\s' trans = string.split(gotoLine(f,re.compile("^NULT([\s\d\S]*)")).group(1)) /usr/lib/python3/dist-packages/ghmm/modhmmer.py:211: SyntaxWarning: invalid escape sequence '\s' trans = string.split(gotoLine(f,re.compile("^NULE([\s\d\S]*)")).group(1))
