Package: src:khmer
Version: 3.0.0~a3+dfsg-8
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p 3.12
I: pybuild base:311: python3.12 setup.py config
/<<PKGBUILDDIR>>/versioneer.py:421: SyntaxWarning: invalid escape sequence '\s'
LONG_VERSION_PY['git'] = '''
*** NOTE: Found Cython, extension files will be transpiled if this is an
install invocation.
/usr/lib/python3/dist-packages/setuptools/dist.py:452:
SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
[... snipped ...]
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/align/gap_anchor.h:256:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
256 | public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from third-party/seqan/core/include/seqan/bam_io.h:107,
from third-party/seqan/core/include/seqan/store.h:41:
third-party/seqan/core/include/seqan/bam_io/bam_stream.h:180:10: warning:
‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr'
instead [-Wdeprecated-declarations]
180 | std::auto_ptr<XamWriter_> _writer;
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
third-party/seqan/core/include/seqan/bam_io/bam_stream.h:182:10: warning:
‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr'
instead [-Wdeprecated-declarations]
182 | std::auto_ptr<XamReader_> _reader;
| ^~~~~~~~
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from third-party/seqan/core/include/seqan/store.h:59:
third-party/seqan/core/include/seqan/store/store_align.h:322:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
322 | public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:332:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
332 | public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:342:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
342 | public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:352:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
352 | public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:362:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
362 | public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
third-party/seqan/core/include/seqan/store/store_align.h:372:23: warning:
‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’
is deprecated [-Wdeprecated-declarations]
372 | public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash
-I/usr/include/python3.12 -c src/oxli/storage.cc -o
build/temp.linux-x86_64-cpython-312/src/oxli/storage.o -O3 -std=c++11 -fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash
-I/usr/include/python3.12 -c src/oxli/subset.cc -o
build/temp.linux-x86_64-cpython-312/src/oxli/subset.o -O3 -std=c++11 -fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash
-I/usr/include/python3.12 -c src/oxli/traversal.cc -o
build/temp.linux-x86_64-cpython-312/src/oxli/traversal.o -O3 -std=c++11 -fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DVERSION=3.0.0a3 -DSEQAN_HAS_BZIP2=1
-DSEQAN_HAS_ZLIB=1 -UNO_UNIQUE_RC -Iinclude -I. -Ithird-party/seqan/core/include
-Ithird-party/smhasher -Ithird-party/cqf -Ithird-party/rollinghash
-I/usr/include/python3.12 -c third-party/smhasher/MurmurHash3.cc -o
build/temp.linux-x86_64-cpython-312/third-party/smhasher/MurmurHash3.o -O3 -std=c++11
-fopenmp
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -shared
-Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
build/temp.linux-x86_64-cpython-312/src/khmer/_cpy_khmer.o
build/temp.linux-x86_64-cpython-312/src/khmer/_cpy_readparsers.o
build/temp.linux-x86_64-cpython-312/src/khmer/_cpy_utils.o build/temp.linux-x86_64-cpython-312/src/oxli/alphabets.o
build/temp.linux-x86_64-cpython-312/src/oxli/assembler.o build/temp.linux-x86_64-cpython-312/src/oxli/hashgraph.o
build/temp.linux-x86_64-cpython-312/src/oxli/hashtable.o build/temp.linux-x86_64-cpython-312/src/oxli/hllcounter.o
build/temp.linux-x86_64-cpython-312/src/oxli/kmer_filters.o
build/temp.linux-x86_64-cpython-312/src/oxli/kmer_hash.o build/temp.linux-x86_64-cpython-312/src/oxli/labelhash.o
build/temp.linux-x86_64-cpython-312/src/oxli/read_aligner.o
build/temp.linux-x86_64-cpython-312/src/oxli/read_parsers.o build/temp.linux-x86_64-cpython-312/src/oxli/storage.o
build/temp.linux-x86_64-cpython-312/src/oxli/subset.o build/temp.linux-x86_64-cpython-312/src/oxli/traversal.o
build/temp.linux-x86_64-cpython-312/third-party/smhasher/MurmurHash3.o third-party/cqf/gqf.o
-L/usr/lib/x86_64-linux-gnu -lz -lbz2 -o
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_khmer.cpython-312-x86_64-linux-gnu.so
-fopenmp
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/khmer
creating /<<PKGBUILDDIR>>/debian/khmer/usr
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/thread_utils.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_version.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/utils.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/khmer_logger.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
creating
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/oxli_exception_convert.cc
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/graphs.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/__init__.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashset.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/parsing.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hashing.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/oxli_types.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/utils.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/legacy_partitioning.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.cpp ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/traversal.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.pxd ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/assembly.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/labeling.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/oxli_exception_convert.hh
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/readaligner.pyx ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_oxli/hllcounter.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/_khmer.cpython-312-x86_64-linux-gnu.so
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/kfile.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/khmer_args.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/__init__.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
creating
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_assembly.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_cython_parsing.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_lump.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_scripts.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_filter_abund.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/graph_features.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_banding.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_script_arguments.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_streaming_io.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_nodegraph.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/table_fixtures.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_tabletype.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_sequence_validation.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_oxli_functions.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_sandbox_scripts.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_read_parsers.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_script_output.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_cpython_hierarchy.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/__init__.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_countgraph.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_labelhash.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_threaded_sequence_processor.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_subset_graph.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_qfstorage.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_counttable.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_graph.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_hashset.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_normalize_by_median.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
creating
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-slash1.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k12.ht
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-slash1.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/simple-genome.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.truncated.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.paired2.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/real-partition-tiny.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.malformat.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-paired.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-3.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.paired_bad
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k32.tagset
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/filter-test-A.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k32.stoptags
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k12.ht.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/truncated.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-paired.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fa.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/dn-test-all-paired-all-keep.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k12.ct
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-reads.fq.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.badright
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/real-partition-small.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-error-reads.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fq.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-filter-abund-Ns.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/single-read.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/dn-test-none-paired.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.paired.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-fastq-reads.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed-witherror.fa.pe
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/banding-reads.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/simple-genome-reads.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-reads.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fq ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-b.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fq.se
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.badleft
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/old-style-format-w-comments.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k12.ht
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/unclean-reads.fastq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.odd.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-empty.fa.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/all-A.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-fastq-reads.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-X2.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken2.fq.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/normC20k20.ct ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-sweep-contigs.fp
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-short.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-31-c.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/filter-test-B.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/casava_18-pe.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/fakelump.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-overlap2.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-graph5.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-reads.fq.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fq.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa.part
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/seq-b.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-2.fa.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fa.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-labels.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fa.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fa.pe
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-empty.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.even.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/branched-genome.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/bogus.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/README.rst
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken4.fq.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed-2.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/empty-file.bz2 ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-sweep-reads.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-multi.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.gz
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/dn-test-some-paired-all-keep.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fa.se
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/readaligner-k12.json
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken2.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/multi-output.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/combine_parts_1.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-graph.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/badversion-k32.tagset
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-abund-read-impaired.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-slash1.fq.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken3.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/empty-file.gz ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/empty-file
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken.fq.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/readaligner-default.json
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-overlap1.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-graph2.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-fastq-n-reads.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/goodversion-k32.stoptags
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/100-reads.fq.truncated.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/valid-read-testing.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/biglump-random-20-a.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed.fq.pe
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-large.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired_one.base.dif.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/seq-a.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/single-read.fq ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-mixed-broken.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fq.bz2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-transcript.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken3.fq.1
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-output-partitions.fa
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/fakelump.fa.stoptags.txt
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/random-20-a.fa ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired.malformat.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/paired-broken4.fq.2
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test-data/test-sweep-reads.fq
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test-data
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_counting_single.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_functions.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_hll.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/.gitignore ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_version.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_read_aligner.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_nibblestorage.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/khmer_tst_utils.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_memory.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/tests/test_read_handling.py
-> /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/khmer/trimming.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/partition.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/build_graph.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/__init__.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/oxli/functions.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/thread_utils.py
to thread_utils.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_version.py
to _version.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/utils.py
to utils.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/khmer_logger.py
to khmer_logger.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/_oxli/__init__.py
to __init__.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/kfile.py
to kfile.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/khmer_args.py
to khmer_args.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/__init__.py
to __init__.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_assembly.py
to test_assembly.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_cython_parsing.py
to test_cython_parsing.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_lump.py
to test_lump.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_scripts.py
to test_scripts.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_filter_abund.py
to test_filter_abund.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/graph_features.py
to graph_features.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_banding.py
to test_banding.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_script_arguments.py
to test_script_arguments.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_streaming_io.py
to test_streaming_io.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_nodegraph.py
to test_nodegraph.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/table_fixtures.py
to table_fixtures.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_tabletype.py
to test_tabletype.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_sequence_validation.py
to test_sequence_validation.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_oxli_functions.py
to test_oxli_functions.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_sandbox_scripts.py
to test_sandbox_scripts.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_read_parsers.py
to test_read_parsers.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_script_output.py
to test_script_output.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_cpython_hierarchy.py
to test_cpython_hierarchy.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/__init__.py
to __init__.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_countgraph.py
to test_countgraph.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_labelhash.py
to test_labelhash.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_threaded_sequence_processor.py
to test_threaded_sequence_processor.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py
to test_subset_graph.cpython-312.pyc
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:61: SyntaxWarning:
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:82: SyntaxWarning:
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:278: SyntaxWarning:
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:476: SyntaxWarning:
"is" with 'int' literal. Did you mean "=="?
/usr/lib/python3.12/dist-packages/khmer/tests/test_subset_graph.py:509: SyntaxWarning:
"is" with 'int' literal. Did you mean "=="?
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_qfstorage.py
to test_qfstorage.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_counttable.py
to test_counttable.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_graph.py
to test_graph.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_hashset.py
to test_hashset.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_normalize_by_median.py
to test_normalize_by_median.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_counting_single.py
to test_counting_single.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_functions.py
to test_functions.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_hll.py
to test_hll.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_version.py
to test_version.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_read_aligner.py
to test_read_aligner.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_nibblestorage.py
to test_nibblestorage.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/khmer_tst_utils.py
to khmer_tst_utils.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_memory.py
to test_memory.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/tests/test_read_handling.py
to test_read_handling.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer/trimming.py
to trimming.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/partition.py
to partition.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/build_graph.py
to build_graph.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/__init__.py
to __init__.cpython-312.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/oxli/functions.py
to functions.cpython-312.pyc
running install_egg_info
Copying khmer.egg-info to
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/python3.12/dist-packages/khmer-3.0.0a3.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer
creating /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/abundance-dist.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/normalize-by-median.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/count-median.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/abundance-dist-single.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/filter-abund-single.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/extract-paired-reads.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/filter-abund.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/readstats.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/merge-partitions.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/partition-graph.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/extract-long-sequences.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/find-knots.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/sample-reads-randomly.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/fastq-to-fasta.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/load-into-counting.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/load-graph.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/do-partition.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/split-paired-reads.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/extract-partitions.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/unique-kmers.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/filter-stoptags.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/annotate-partitions.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/interleave-reads.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/trim-low-abund.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
copying build/scripts-3.12/make-initial-stoptags.py ->
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/abundance-dist.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/normalize-by-median.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/count-median.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/abundance-dist-single.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/filter-abund-single.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/extract-paired-reads.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/filter-abund.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/readstats.py
to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/merge-partitions.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/partition-graph.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/extract-long-sequences.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/find-knots.py
to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/sample-reads-randomly.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/fastq-to-fasta.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/load-into-counting.py to 755
changing mode of /<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/load-graph.py
to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/do-partition.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/split-paired-reads.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/extract-partitions.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/unique-kmers.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/filter-stoptags.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/annotate-partitions.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/interleave-reads.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/trim-low-abund.py to 755
changing mode of
/<<PKGBUILDDIR>>/debian/khmer/usr/lib/khmer/bin/make-initial-stoptags.py to 755
PYBUILD_SYSTEM=custom \
PYBUILD_TEST_ARGS="cd {dir}; export PATH={destdir}/usr/lib/khmer/bin:$PATH
; \
cd {build_dir}; export PYTHONPATH=$(pwd); {interpreter} -m pytest \
-m 'not known_failing and not jenkins and not huge and not noroot'\
-q" dh_auto_test
pybuild --test --test-pytest -i python{version} -p 3.12
I: pybuild base:311: cd '/<<PKGBUILDDIR>>'; export
PATH='/<<PKGBUILDDIR>>/debian/khmer'/usr/lib/khmer/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
; cd '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build'; export PYTHONPATH=/<<PKGBUILDDIR>>;
python3.12 -m pytest -m 'not known_failing and not jenkins and not huge and not noroot' -q
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build
configfile: pytest.ini
testpaths: tests
plugins: typeguard-4.3.0
collected 1492 items / 47 deselected / 1445 selected
tests/test_assembly.py ................................................. [ 3%]
........................................................................ [ 8%]
........................................................................ [ 13%]
........................................................................ [ 18%]
........................................................................ [ 23%]
.................... [ 24%]
tests/test_banding.py ............ [ 25%]
tests/test_countgraph.py ................................Fatal Python error:
Aborted
Current thread 0x00007f01a5290080 (most recent call first):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build/tests/test_countgraph.py",
line 661 in test_save_load_occupied_small
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in
pytest_pyfunc_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in
pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in <lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in
call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in
runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in
pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in
pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in
wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in
pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in
main
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in
console_main
File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in <module>
File "<frozen runpy>", line 88 in _run_code
File "<frozen runpy>", line 198 in _run_module_as_main
Extension modules: khmer._khmer, khmer._oxli.hashing, khmer._oxli.utils,
khmer._oxli.parsing, khmer._oxli.hashset, khmer._oxli.traversal,
khmer._oxli.graphs, khmer._oxli.legacy_partitioning, khmer._oxli.labeling,
khmer._oxli.assembly, khmer._oxli.readaligner, khmer._oxli.hllcounter (total:
12)
Aborted
E: pybuild pybuild:389: test: plugin custom failed with: exit code=134: cd '/<<PKGBUILDDIR>>'; export
PATH='/<<PKGBUILDDIR>>/debian/khmer'/usr/lib/khmer/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
; cd '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_khmer/build'; export PYTHONPATH=/<<PKGBUILDDIR>>;
python3.12 -m pytest -m 'not known_failing and not jenkins and not huge and not noroot' -q
rm -fr -- /tmp/dh-xdg-rundir-Kn_fBcP6
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12
returned exit code 13
make[1]: *** [debian/rules:29: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202409/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
