Dear maintainers, There was a hard-coded test dependency on libgenometools0 in debian/tests/control which prevents this package from being able to migrate to testing.
There is no need to hard-code a dependency on the runtime lib given that
there is already a test dependency on libgenometools-dev.
I am uploading a follow-up 0-day NMU to fix this outstanding issue from the
time_t transition. Please find attached a comprehensive NMU debdiff.
On Wed, Feb 28, 2024 at 04:30:06PM +0000, Steve Langasek wrote:
> Dear maintainer,
>
> Please find attached a final version of this patch for the time_t
> transition. This patch is being uploaded to unstable.
>
> Note that this adds a versioned build-dependency on dpkg-dev, to guard
> against accidental backports with a wrong ABI.
>
> Thanks!
>
>
> -- System Information:
> Debian Release: trixie/sid
> APT prefers unstable
> APT policy: (500, 'unstable')
> Architecture: amd64 (x86_64)
>
> Kernel: Linux 6.5.0-14-generic (SMP w/12 CPU threads; PREEMPT)
> Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
> Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
> Shell: /bin/sh linked to /usr/bin/dash
> Init: systemd (via /run/systemd/system)
> diff -Nru genometools-1.6.5+ds/debian/changelog
> genometools-1.6.5+ds/debian/changelog
> --- genometools-1.6.5+ds/debian/changelog 2023-10-25 22:08:09.000000000
> +0000
> +++ genometools-1.6.5+ds/debian/changelog 2024-02-28 16:25:48.000000000
> +0000
> @@ -1,3 +1,10 @@
> +genometools (1.6.5+ds-2.1) unstable; urgency=medium
> +
> + * Non-maintainer upload.
> + * Rename libraries for 64-bit time_t transition. Closes: #1062071
> +
> + -- Steve Langasek <vor...@debian.org> Wed, 28 Feb 2024 16:25:48 +0000
> +
> genometools (1.6.5+ds-2) unstable; urgency=medium
>
> * Facilitate building twice from the same source directory.
> diff -Nru genometools-1.6.5+ds/debian/control
> genometools-1.6.5+ds/debian/control
> --- genometools-1.6.5+ds/debian/control 2023-09-19 21:22:02.000000000
> +0000
> +++ genometools-1.6.5+ds/debian/control 2024-02-28 16:25:48.000000000
> +0000
> @@ -4,7 +4,7 @@
> Andreas Tille <ti...@debian.org>
> Section: science
> Priority: optional
> -Build-Depends: debhelper (>= 13),
> +Build-Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13),
> debhelper-compat (= 13),
> dh-python,
> liblua5.1-0-dev,
> @@ -70,7 +70,10 @@
> transformations, style files, etc. required to use the GenomeTools
> executable and/or library.
>
> -Package: libgenometools0
> +Package: libgenometools0t64
> +Provides: ${t64:Provides}
> +Replaces: libgenometools0
> +Breaks: libgenometools0 (<< ${source:Version})
> Architecture: any
> Section: libs
> Depends: ${shlibs:Depends},
> @@ -91,7 +94,7 @@
> Section: libdevel
> Depends: ${shlibs:Depends},
> ${misc:Depends},
> - libgenometools0 (= ${binary:Version})
> + libgenometools0t64 (= ${binary:Version})
> Description: development files for GenomeTools
> This package contains the GenomeTools static library and necessary
> header files.
> @@ -118,7 +121,7 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends},
> ${python3:Depends},
> - libgenometools0
> + libgenometools0t64
> Description: Python3 bindings for genometools
> Partial Python3 bindings for the GenomeTools library. Besides basic
> bioinformatics data structures, the library contains components for sequence
> diff -Nru genometools-1.6.5+ds/debian/libgenometools0.install
> genometools-1.6.5+ds/debian/libgenometools0.install
> --- genometools-1.6.5+ds/debian/libgenometools0.install 2023-09-19
> 21:22:02.000000000 +0000
> +++ genometools-1.6.5+ds/debian/libgenometools0.install 1970-01-01
> 00:00:00.000000000 +0000
> @@ -1 +0,0 @@
> -lib/libgenometools.so.0 usr/lib
> diff -Nru genometools-1.6.5+ds/debian/libgenometools0t64.install
> genometools-1.6.5+ds/debian/libgenometools0t64.install
> --- genometools-1.6.5+ds/debian/libgenometools0t64.install 1970-01-01
> 00:00:00.000000000 +0000
> +++ genometools-1.6.5+ds/debian/libgenometools0t64.install 2023-09-19
> 21:22:02.000000000 +0000
> @@ -0,0 +1 @@
> +lib/libgenometools.so.0 usr/lib
> diff -Nru genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
> genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
> --- genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
> 1970-01-01 00:00:00.000000000 +0000
> +++ genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
> 2024-02-28 16:15:24.000000000 +0000
> @@ -0,0 +1 @@
> +libgenometools0t64: package-name-doesnt-match-sonames libgenometools0
--
Steve Langasek Give me a lever long enough and a Free OS
Debian Developer to set it on, and I can move the world.
Ubuntu Developer https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org
diff -Nru genometools-1.6.5+ds/debian/changelog
genometools-1.6.5+ds/debian/changelog
--- genometools-1.6.5+ds/debian/changelog 2023-10-25 22:08:09.000000000
+0000
+++ genometools-1.6.5+ds/debian/changelog 2024-04-27 01:41:52.000000000
+0000
@@ -1,3 +1,17 @@
+genometools (1.6.5+ds-2.2) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Remove wrong hard-coded test dep.
+
+ -- Steve Langasek <vor...@debian.org> Sat, 27 Apr 2024 01:41:52 +0000
+
+genometools (1.6.5+ds-2.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition. Closes: #1062071
+
+ -- Steve Langasek <vor...@debian.org> Wed, 28 Feb 2024 16:25:48 +0000
+
genometools (1.6.5+ds-2) unstable; urgency=medium
* Facilitate building twice from the same source directory.
diff -Nru genometools-1.6.5+ds/debian/control
genometools-1.6.5+ds/debian/control
--- genometools-1.6.5+ds/debian/control 2023-09-19 21:22:02.000000000 +0000
+++ genometools-1.6.5+ds/debian/control 2024-04-27 01:41:52.000000000 +0000
@@ -4,7 +4,7 @@
Andreas Tille <ti...@debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 13),
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13),
debhelper-compat (= 13),
dh-python,
liblua5.1-0-dev,
@@ -70,7 +70,10 @@
transformations, style files, etc. required to use the GenomeTools
executable and/or library.
-Package: libgenometools0
+Package: libgenometools0t64
+Provides: ${t64:Provides}
+Replaces: libgenometools0
+Breaks: libgenometools0 (<< ${source:Version})
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
@@ -91,7 +94,7 @@
Section: libdevel
Depends: ${shlibs:Depends},
${misc:Depends},
- libgenometools0 (= ${binary:Version})
+ libgenometools0t64 (= ${binary:Version})
Description: development files for GenomeTools
This package contains the GenomeTools static library and necessary
header files.
@@ -118,7 +121,7 @@
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
- libgenometools0
+ libgenometools0t64
Description: Python3 bindings for genometools
Partial Python3 bindings for the GenomeTools library. Besides basic
bioinformatics data structures, the library contains components for sequence
diff -Nru genometools-1.6.5+ds/debian/libgenometools0.install
genometools-1.6.5+ds/debian/libgenometools0.install
--- genometools-1.6.5+ds/debian/libgenometools0.install 2023-09-19
21:22:02.000000000 +0000
+++ genometools-1.6.5+ds/debian/libgenometools0.install 1970-01-01
00:00:00.000000000 +0000
@@ -1 +0,0 @@
-lib/libgenometools.so.0 usr/lib
diff -Nru genometools-1.6.5+ds/debian/libgenometools0t64.install
genometools-1.6.5+ds/debian/libgenometools0t64.install
--- genometools-1.6.5+ds/debian/libgenometools0t64.install 1970-01-01
00:00:00.000000000 +0000
+++ genometools-1.6.5+ds/debian/libgenometools0t64.install 2023-09-19
21:22:02.000000000 +0000
@@ -0,0 +1 @@
+lib/libgenometools.so.0 usr/lib
diff -Nru genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
--- genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
1970-01-01 00:00:00.000000000 +0000
+++ genometools-1.6.5+ds/debian/libgenometools0t64.lintian-overrides
2024-02-28 16:15:24.000000000 +0000
@@ -0,0 +1 @@
+libgenometools0t64: package-name-doesnt-match-sonames libgenometools0
diff -Nru genometools-1.6.5+ds/debian/tests/control
genometools-1.6.5+ds/debian/tests/control
--- genometools-1.6.5+ds/debian/tests/control 2023-09-19 21:22:02.000000000
+0000
+++ genometools-1.6.5+ds/debian/tests/control 2024-03-23 17:54:54.000000000
+0000
@@ -1,5 +1,5 @@
Tests: build-lib
-Depends: libgenometools0-dev, libgenometools0, build-essential
+Depends: libgenometools0-dev, build-essential
Tests: python-lib
Depends: python3-genometools, python3
signature.asc
Description: PGP signature
