Dear maintainer,
Please find attached a final version of this patch for the time_t
transition. This patch is being uploaded to unstable.
Note that this adds a versioned build-dependency on dpkg-dev, to guard
against accidental backports with a wrong ABI.
Thanks!
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-21-generic (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru libbigwig-0.4.7+dfsg/debian/changelog
libbigwig-0.4.7+dfsg/debian/changelog
--- libbigwig-0.4.7+dfsg/debian/changelog 2022-09-10 07:33:51.000000000
+0000
+++ libbigwig-0.4.7+dfsg/debian/changelog 2024-02-29 08:50:16.000000000
+0000
@@ -1,3 +1,10 @@
+libbigwig (0.4.7+dfsg-3.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition. Closes: #1062229
+
+ -- Lukas Märdian <sl...@debian.org> Thu, 29 Feb 2024 08:50:16 +0000
+
libbigwig (0.4.7+dfsg-3) unstable; urgency=medium
* Team upload.
diff -Nru libbigwig-0.4.7+dfsg/debian/control
libbigwig-0.4.7+dfsg/debian/control
--- libbigwig-0.4.7+dfsg/debian/control 2022-08-29 16:56:21.000000000 +0000
+++ libbigwig-0.4.7+dfsg/debian/control 2024-02-29 08:50:16.000000000 +0000
@@ -3,8 +3,8 @@
Uploaders: Steffen Moeller <moel...@debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 13),
- d-shlibs,
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
+ d-shlibs (>= 0.106~),
libcurl4-gnutls-dev|libcurl-dev,
zlib1g-dev
Build-Depends-Indep: doxygen
@@ -14,7 +14,10 @@
Homepage: https://github.com/dpryan79/libBigWig/
Rules-Requires-Root: no
-Package: libbigwig0
+Package: libbigwig0t64
+Provides: ${t64:Provides}
+Replaces: libbigwig0
+Conflicts: libbigwig0 (<< ${source:Version})
Architecture: any
Section: libs
Multi-Arch: same
@@ -31,7 +34,7 @@
Architecture: any
Multi-Arch: same
Section: libdevel
-Depends: libbigwig0 (= ${binary:Version}),
+Depends: libbigwig0t64 (= ${binary:Version}),
${misc:Depends}
Description: C library for handling bigWig files - header files
This package provides the files needed to develop with the libBigWig
diff -Nru libbigwig-0.4.7+dfsg/debian/libbigwig0.symbols
libbigwig-0.4.7+dfsg/debian/libbigwig0.symbols
--- libbigwig-0.4.7+dfsg/debian/libbigwig0.symbols 2022-08-29
16:52:07.000000000 +0000
+++ libbigwig-0.4.7+dfsg/debian/libbigwig0.symbols 1970-01-01
00:00:00.000000000 +0000
@@ -1,66 +0,0 @@
-libBigWig.so.0 libbigwig0 #MINVER#
- GLOBAL_DEFAULTBUFFERSIZE@Base 0.4.6
- addIntervalValue@Base 0.4.6
- bbDestroyOverlappingEntries@Base 0.4.6
- bbGetOverlappingEntries@Base 0.4.6
- bbGetOverlappingEntriesCore@Base 0.4.6
- bbGetSQL@Base 0.4.6
- bbIsBigBed@Base 0.4.6
- bbOpen@Base 0.4.6
- bbOverlappingEntriesIterator@Base 0.4.6
- bwAddIntervalSpanSteps@Base 0.4.6
- bwAddIntervalSpans@Base 0.4.6
- bwAddIntervals@Base 0.4.6
- bwAppendIntervalSpanSteps@Base 0.4.6
- bwAppendIntervalSpans@Base 0.4.6
- bwAppendIntervals@Base 0.4.6
- bwCleanup@Base 0.4.6
- bwClose@Base 0.4.6
- bwCreateChromList@Base 0.4.6
- bwCreateHdr@Base 0.4.6
- bwDestroyIndex@Base 0.4.6
- bwDestroyIndexNode@Base 0.4.6
- bwDestroyOverlappingIntervals@Base 0.4.6
- bwFillBuffer@Base 0.4.6
- bwFillDataHdr@Base 0.4.6
- bwFinalize@Base 0.4.6
- bwGetOverlappingIntervals@Base 0.4.6
- bwGetOverlappingIntervalsCore@Base 0.4.6
- bwGetTid@Base 0.4.6
- bwGetValues@Base 0.4.6
- bwInit@Base 0.4.6
- bwIsBigWig@Base 0.4.6
- bwIteratorDestroy@Base 0.4.6
- bwIteratorNext@Base 0.4.6
- bwOpen@Base 0.4.6
- bwOverlappingIntervalsIterator@Base 0.4.6
- bwRead@Base 0.4.6
- bwReadIndex@Base 0.4.6
- bwSetPos@Base 0.4.6
- bwStats@Base 0.4.6
- bwStatsFromFull@Base 0.4.6
- bwStrdup@Base 0.4.7
- bwTell@Base 0.4.6
- bwWriteHdr@Base 0.4.6
- constructZoomLevels@Base 0.4.6
- destroyBWOverlapBlock@Base 0.4.6
- destroyVals_t@Base 0.4.6
- getContentLength@Base 0.4.6
- getScalar@Base 0.4.6
- makeZoomLevels@Base 0.4.6
- nextPos@Base 0.4.6
- overlapsInterval@Base 0.4.6
- updateInterval@Base 0.4.6
- urlClose@Base 0.4.6
- urlFetchData@Base 0.4.6
- urlOpen@Base 0.4.6
- urlRead@Base 0.4.6
- urlSeek@Base 0.4.6
- url_fread@Base 0.4.6
- walkRTreeNodes@Base 0.4.6
- writeIndex@Base 0.4.6
- writeIndexOffsets@Base 0.4.6
- writeIndexTree@Base 0.4.6
- writeIndexTreeNode@Base 0.4.6
- writeSummary@Base 0.4.6
- writeZoomLevels@Base 0.4.6
diff -Nru libbigwig-0.4.7+dfsg/debian/libbigwig0t64.lintian-overrides
libbigwig-0.4.7+dfsg/debian/libbigwig0t64.lintian-overrides
--- libbigwig-0.4.7+dfsg/debian/libbigwig0t64.lintian-overrides 1970-01-01
00:00:00.000000000 +0000
+++ libbigwig-0.4.7+dfsg/debian/libbigwig0t64.lintian-overrides 2024-02-29
08:48:00.000000000 +0000
@@ -0,0 +1 @@
+libbigwig0t64: package-name-doesnt-match-sonames libbigwig0
diff -Nru libbigwig-0.4.7+dfsg/debian/libbigwig0t64.symbols
libbigwig-0.4.7+dfsg/debian/libbigwig0t64.symbols
--- libbigwig-0.4.7+dfsg/debian/libbigwig0t64.symbols 1970-01-01
00:00:00.000000000 +0000
+++ libbigwig-0.4.7+dfsg/debian/libbigwig0t64.symbols 2024-02-29
08:48:00.000000000 +0000
@@ -0,0 +1,66 @@
+libBigWig.so.0 libbigwig0t64 #MINVER#
+ GLOBAL_DEFAULTBUFFERSIZE@Base 0.4.6
+ addIntervalValue@Base 0.4.6
+ bbDestroyOverlappingEntries@Base 0.4.6
+ bbGetOverlappingEntries@Base 0.4.6
+ bbGetOverlappingEntriesCore@Base 0.4.6
+ bbGetSQL@Base 0.4.6
+ bbIsBigBed@Base 0.4.6
+ bbOpen@Base 0.4.6
+ bbOverlappingEntriesIterator@Base 0.4.6
+ bwAddIntervalSpanSteps@Base 0.4.6
+ bwAddIntervalSpans@Base 0.4.6
+ bwAddIntervals@Base 0.4.6
+ bwAppendIntervalSpanSteps@Base 0.4.6
+ bwAppendIntervalSpans@Base 0.4.6
+ bwAppendIntervals@Base 0.4.6
+ bwCleanup@Base 0.4.6
+ bwClose@Base 0.4.6
+ bwCreateChromList@Base 0.4.6
+ bwCreateHdr@Base 0.4.6
+ bwDestroyIndex@Base 0.4.6
+ bwDestroyIndexNode@Base 0.4.6
+ bwDestroyOverlappingIntervals@Base 0.4.6
+ bwFillBuffer@Base 0.4.6
+ bwFillDataHdr@Base 0.4.6
+ bwFinalize@Base 0.4.6
+ bwGetOverlappingIntervals@Base 0.4.6
+ bwGetOverlappingIntervalsCore@Base 0.4.6
+ bwGetTid@Base 0.4.6
+ bwGetValues@Base 0.4.6
+ bwInit@Base 0.4.6
+ bwIsBigWig@Base 0.4.6
+ bwIteratorDestroy@Base 0.4.6
+ bwIteratorNext@Base 0.4.6
+ bwOpen@Base 0.4.6
+ bwOverlappingIntervalsIterator@Base 0.4.6
+ bwRead@Base 0.4.6
+ bwReadIndex@Base 0.4.6
+ bwSetPos@Base 0.4.6
+ bwStats@Base 0.4.6
+ bwStatsFromFull@Base 0.4.6
+ bwStrdup@Base 0.4.7
+ bwTell@Base 0.4.6
+ bwWriteHdr@Base 0.4.6
+ constructZoomLevels@Base 0.4.6
+ destroyBWOverlapBlock@Base 0.4.6
+ destroyVals_t@Base 0.4.6
+ getContentLength@Base 0.4.6
+ getScalar@Base 0.4.6
+ makeZoomLevels@Base 0.4.6
+ nextPos@Base 0.4.6
+ overlapsInterval@Base 0.4.6
+ updateInterval@Base 0.4.6
+ urlClose@Base 0.4.6
+ urlFetchData@Base 0.4.6
+ urlOpen@Base 0.4.6
+ urlRead@Base 0.4.6
+ urlSeek@Base 0.4.6
+ url_fread@Base 0.4.6
+ walkRTreeNodes@Base 0.4.6
+ writeIndex@Base 0.4.6
+ writeIndexOffsets@Base 0.4.6
+ writeIndexTree@Base 0.4.6
+ writeIndexTreeNode@Base 0.4.6
+ writeSummary@Base 0.4.6
+ writeZoomLevels@Base 0.4.6
diff -Nru libbigwig-0.4.7+dfsg/debian/rules libbigwig-0.4.7+dfsg/debian/rules
--- libbigwig-0.4.7+dfsg/debian/rules 2022-08-29 17:34:16.000000000 +0000
+++ libbigwig-0.4.7+dfsg/debian/rules 2024-02-29 08:50:10.000000000 +0000
@@ -22,6 +22,7 @@
override_dh_auto_install:
dh_auto_install
d-shlibmove --commit \
+ --t64 \
--multiarch \
--devunversioned \
--exclude-la \
