Dear maintainer, Please find attached a final version of this patch for the time_t transition. This patch is being uploaded to unstable.
Note that this adds a versioned build-dependency on dpkg-dev, to guard against accidental backports with a wrong ABI. Thanks! -- System Information: Debian Release: trixie/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 6.5.0-21-generic (SMP w/4 CPU threads; PREEMPT) Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system)
diff -Nru jellyfish-2.3.1/debian/changelog jellyfish-2.3.1/debian/changelog --- jellyfish-2.3.1/debian/changelog 2024-01-01 10:43:16.000000000 +0000 +++ jellyfish-2.3.1/debian/changelog 2024-02-28 13:23:36.000000000 +0000 @@ -1,3 +1,10 @@ +jellyfish (2.3.1-2.1) unstable; urgency=medium + + * Non-maintainer upload. + * Rename libraries for 64-bit time_t transition. Closes: #1064157 + + -- Lukas Märdian <sl...@debian.org> Wed, 28 Feb 2024 13:23:36 +0000 + jellyfish (2.3.1-2) unstable; urgency=medium [ Zhang Na ] diff -Nru jellyfish-2.3.1/debian/control jellyfish-2.3.1/debian/control --- jellyfish-2.3.1/debian/control 2024-01-01 10:17:41.000000000 +0000 +++ jellyfish-2.3.1/debian/control 2024-02-28 13:23:36.000000000 +0000 @@ -6,8 +6,8 @@ Étienne Mollier <emoll...@debian.org> Section: science Priority: optional -Build-Depends: debhelper-compat (= 13), - d-shlibs, +Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), + d-shlibs (>= 0.106~), autoconf-archive, yaggo, pkg-config, @@ -32,7 +32,7 @@ Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64 Depends: ${shlibs:Depends}, ${misc:Depends}, - libjellyfish-2.0-2 (= ${binary:Version}) + libjellyfish-2.0-2t64 (= ${binary:Version}) Description: count k-mers in DNA sequences JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences @@ -48,7 +48,10 @@ binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. -Package: libjellyfish-2.0-2 +Package: libjellyfish-2.0-2t64 +Provides: ${t64:Provides} +Replaces: libjellyfish-2.0-2 +Conflicts: libjellyfish-2.0-2 (<< ${source:Version}) Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64 Multi-Arch: same Section: libs @@ -76,7 +79,7 @@ Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64 Section: libdevel Depends: ${misc:Depends}, - libjellyfish-2.0-2 (= ${binary:Version}) + libjellyfish-2.0-2t64 (= ${binary:Version}) Description: count k-mers in DNA sequences (development files of jellyfish) JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences diff -Nru jellyfish-2.3.1/debian/libjellyfish-2.0-2.lintian-overrides jellyfish-2.3.1/debian/libjellyfish-2.0-2.lintian-overrides --- jellyfish-2.3.1/debian/libjellyfish-2.0-2.lintian-overrides 2024-01-01 10:16:41.000000000 +0000 +++ jellyfish-2.3.1/debian/libjellyfish-2.0-2.lintian-overrides 1970-01-01 00:00:00.000000000 +0000 @@ -1,2 +0,0 @@ -# Upstream decided to use a dynamic library without really intending to make this a development package -libjellyfish-2.0-2: no-symbols-control-file usr/lib/*/libjellyfish-*.so.* diff -Nru jellyfish-2.3.1/debian/libjellyfish-2.0-2t64.lintian-overrides jellyfish-2.3.1/debian/libjellyfish-2.0-2t64.lintian-overrides --- jellyfish-2.3.1/debian/libjellyfish-2.0-2t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000 +++ jellyfish-2.3.1/debian/libjellyfish-2.0-2t64.lintian-overrides 2024-02-28 13:13:51.000000000 +0000 @@ -0,0 +1,3 @@ +# Upstream decided to use a dynamic library without really intending to make this a development package +libjellyfish-2.0-2t64: no-symbols-control-file usr/lib/*/libjellyfish-*.so.* +libjellyfish-2.0-2t64: package-name-doesnt-match-sonames libjellyfish-2.0-2 diff -Nru jellyfish-2.3.1/debian/rules jellyfish-2.3.1/debian/rules --- jellyfish-2.3.1/debian/rules 2024-01-01 10:16:41.000000000 +0000 +++ jellyfish-2.3.1/debian/rules 2024-02-28 13:23:32.000000000 +0000 @@ -43,6 +43,7 @@ chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so dh_install d-shlibmove --commit \ + --t64 \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/$(DEB_SOURCE)*/$(DEB_SOURCE)/*.hpp" usr/include/$(DEB_SOURCE) \