Hi Graham, Am Wed, Dec 13, 2023 at 12:13:54PM -0100 schrieb Graham Inggs: > I've added removal hints for r-bioc-dss and r-bioc-demixt. Please > file an RC bug for r-bioc-dss to prevent it from migrating straight > back (r-bioc-demixt already has #1058278).
Done for r-bioc-dss. > One problem I see at [1]: > > Not built on buildd: arch all binaries uploaded by tille, a new > source-only upload is needed to allow migration I do not understand this line. What exact package needs a source-only upload? > Remember, all r-bioc-* packages need to migrate together, so all of > your uploads need to be ready before r-bioc-biocgenerics can migrate. > I checked only the first few "Migrates after" links from [1], and > found at least these packages still show autopkgtest regressions > [2][3][4][5][6]. Thank you for these links. Could you please explain how I can obtain these myself? Is there any page I could look at for some kind of summary? Now to these links: > > [1] https://tracker.debian.org/pkg/r-bioc-biocgenerics OK, no idea what source-only upload is needed (see above). > [2] https://tracker.debian.org/pkg/r-bioc-beachmat This shows: autopkgtest for r-bioc-biocsingular/1.16.0+ds-1: amd64: Regression or new test... but that version of r-bioc-biocsingular is in testing and bound to fail. Version 1.18.0+ds matches to BioC API 3.18. Autopkgtest in Salsa CI works as expected. When looking in debci (https://ci.debian.net/packages/r/r-bioc-biocsingular/unstable/amd64/40579344/) the test suite error is caused by pandoc. > [3] https://tracker.debian.org/pkg/r-bioc-biobase Same here: autopkgtest for r-bioc-degreport/1.36.0+dfsg-1: amd64: Regression or new test... we have r-bioc-degreport 1.38.3+dfsg-1 in unstable matching BioC API 3.18. Failures with any former version is bound to fail. Similarly: autopkgtest for r-bioc-multiassayexperiment/1.26.0+dfsg-1: amd64: Regression or new test... version in testing not unstable > [4] https://tracker.debian.org/pkg/r-bioc-biocbaseutils See above autopkgtest for r-bioc-multiassayexperiment/1.26.0+dfsg-1: amd64: Regression or new test... > [5] https://tracker.debian.org/pkg/r-bioc-biocio > [6] https://tracker.debian.org/pkg/r-bioc-biostrings Same problem as above autopkgtest for r-bioc-bsgenome/1.68.0-1: amd64: Regression or new test... in both cases. I admit I have no idea what to do. If the migration issues are caused by running tests against versions in testing which can't pass something is broken. As you wrote above > Remember, all r-bioc-* packages need to migrate together, ... yes, that's why running debci tests is not needed - at least as far as I understood the purpose of a transition. Please let me know if I can do something to fix the situation, but for the moment I have no idea what to do. Sorry if I'm a bit slow to catch on. Kind regards Andreas. -- http://fam-tille.de
