Control: tags -1 + patch
The failing test "install() without package names" was previously
skipped, but enabled again [1] in a recent upload.
The reason the autopkgtests pass in testing [2] is that testing
Bioconductor version 3.16 with R version 4.3 is considered a
misconfiguration, and several tests are skipped. See test output
below.
The following patch will skip the failing test unconditionally:
--- a/tests/testthat/test_install.R
+++ b/tests/testthat/test_install.R
@@ -329,7 +329,7 @@
})
test_that("install() without package names passes ... to install.packages", {
- .skip_if_misconfigured()
+ skip()
object <- FALSE
with_mock(
available.packages = function(...) {
Regards
Graham
[1]
https://salsa.debian.org/r-pkg-team/r-cran-biocmanager/-/commit/9f65e83f51ad6b1b9e8edc05fa92c7bf86e587e7
[2]
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-biocmanager/36777045/log.gz
37s > library(testthat)
37s > library(BiocManager)
37s Bioconductor version '3.16' requires R version '4.2'; use
`version = '3.17'`
37s with R version 4.3; see https://bioconductor.org/install
37s Bioconductor version '3.16' is out-of-date; the current release
version '3.17'
37s is available with R version '4.3'; see https://bioconductor.org/install
37s >
37s > test_check("BiocManager")
84s [ FAIL 0 | WARN 0 | SKIP 27 | PASS 72 ]
84s
84s == Skipped tests (27)
==========================================================
85s * On CRAN (8): 'test_repositories.R:33:5', 'test_repositories.R:127:5',
85s 'test_repositories.R:165:5', 'test_version.R:17:5',
'test_version.R:39:5',
85s 'test_version.R:235:5', 'test_version.R:246:5', 'test_version.R:277:5'
85s * mis-configuration, R 4.3.1, Bioconductor 3.16 (18):
'test_install.R:26:5',
85s 'test_install.R:44:5', 'test_install.R:203:5', 'test_install.R:332:5',
85s 'test_repositories.R:4:5', 'test_repositories.R:13:5',
85s 'test_repositories.R:19:5', 'test_repositories.R:25:5',
85s 'test_repositories.R:42:5', 'test_repositories.R:53:5',
85s 'test_repositories.R:117:5', 'test_valid.R:4:5', 'test_version.R:91:5',
85s 'test_version.R:106:5', 'test_version.R:146:5', 'test_version.R:193:5',
85s 'test_version.R:327:5', 'test_version.R:386:5'
85s * too idiosyncratic for standardized testing (1): 'test_install.R:164:5'
85s
85s [ FAIL 0 | WARN 0 | SKIP 27 | PASS 72 ]
