Package: python-biopython
Version: 1.80+dfsg-4
Severity: normal
Tags: patch
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu mantic ubuntu-patch
X-Debbugs-Cc: sl...@ubuntu.com
Dear Maintainer,
The python3-renderpm binary package got dropped by its (new) maintainer since
src:python-reportlab 4.0.4-1.
This makes python-biopython's build- & autopkgtests fail.
Please see https://bugs.debian.org/1037483 for reference.
In Ubuntu, the attached patch was applied to achieve the following:
* Drop python3-renderpm dependency, as this binary got dropped from
src:python-reportlab by its (new) maintainer. (LP: #2025133)
Thanks for considering the patch.
-- System Information:
Debian Release: bookworm/sid
APT prefers lunar-updates
APT policy: (500, 'lunar-updates'), (500, 'lunar-security'), (500, 'lunar'),
(100, 'lunar-proposed'), (100, 'lunar-backports')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.2.0-23-generic (SMP w/8 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8),
LANGUAGE=de_DE:en_GB:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
diff -Nru python-biopython-1.80+dfsg/debian/control
python-biopython-1.80+dfsg/debian/control
--- python-biopython-1.80+dfsg/debian/control 2022-12-29 14:14:35.000000000
+0100
+++ python-biopython-1.80+dfsg/debian/control 2023-06-27 11:17:19.000000000
+0200
@@ -37,7 +37,6 @@
python3-mmtf <!nocheck>,
python3-pil <!nocheck>,
python3-rdflib <!nocheck>,
- python3-renderpm <!nocheck>,
python3-psycopg2 <!nocheck>,
python3-pygments <!nocheck>,
python3-scipy <!nocheck>,
@@ -58,7 +57,6 @@
Depends: ${python3:Depends},
${shlibs:Depends},
${misc:Depends},
- python3-renderpm,
python3-reportlab,
w3c-sgml-lib
Recommends: python-biopython-doc (= ${source:Version}),
diff -Nru python-biopython-1.80+dfsg/debian/rules
python-biopython-1.80+dfsg/debian/rules
--- python-biopython-1.80+dfsg/debian/rules 2022-12-29 14:14:31.000000000
+0100
+++ python-biopython-1.80+dfsg/debian/rules 2023-06-27 10:49:44.000000000
+0200
@@ -25,7 +25,7 @@
# avoid testing tools that are not packaged for Debian yet (or will never be
packaged since they might be outdated)
# This would not trigger a failure but bloats the build log with irrelevant
noise
-EXCLUDENOTPACKAGED=MSAProbs_tool NACCESS_tool PopGen_GenePop
PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online
+EXCLUDENOTPACKAGED=MSAProbs_tool NACCESS_tool PopGen_GenePop
PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online
GraphicsBitmaps
# avoid amd64 only tools on other architectures
ifeq ($(BUILDARCH),amd64)
