Source: cctbx Version: 2022.9+ds2+~3.11.2+ds1-4 Severity: serious Tags: sid bookworm User: debian...@lists.debian.org Usertags: needs-update User: debian-pyt...@lists.debian.org Usertags: python3.11 Control: affects -1 src:python3-defaults
Dear maintainer(s),We are in the transition of adding python3.11 as a supported Python version [0]. With a recent upload of python3-defaults the autopkgtest of cctbx fails in testing when that autopkgtest is run with the binary packages of python3-defaults from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
python3-defaults from testing 3.10.6-3
cctbx from testing 2022.9+ds2+~3.11.2+ds1-4
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of python3-defaults
to testing [1]. https://docs.python.org/3/whatsnew/3.11.html lists
what's new in Python3.11, it may help to identify what needs to be updated.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [0] https://bugs.debian.org/1021984 [1] https://qa.debian.org/excuses.php?package=python3-defaults https://ci.debian.net/data/autopkgtest/testing/amd64/c/cctbx/28708326/log.gz Testing cctbx with python3.11: Discovering pytest tests for smtbx: refinement/constraints/tests/test_disorder.py: 1 refinement/constraints/tests/test_occupancies.py: 1 refinement/constraints/tests/test_rigid.py: 9 refinement/constraints/tests/test_same_group.py: 2==================================== ERRORS ==================================== _______ ERROR collecting refinement/constraints/tests/test_direction.py ________
/usr/lib/python3.11/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1206: in _gcd_import
???
<frozen importlib._bootstrap>:1178: in _find_and_load
???
<frozen importlib._bootstrap>:1128: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1206: in _gcd_import
???
<frozen importlib._bootstrap>:1178: in _find_and_load
???
<frozen importlib._bootstrap>:1128: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1206: in _gcd_import
???
<frozen importlib._bootstrap>:1178: in _find_and_load
???
<frozen importlib._bootstrap>:1128: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
<frozen importlib._bootstrap>:1206: in _gcd_import
???
<frozen importlib._bootstrap>:1178: in _find_and_load
???
<frozen importlib._bootstrap>:1149: in _find_and_load_unlocked
???
<frozen importlib._bootstrap>:690: in _load_unlocked
???
<frozen importlib._bootstrap_external>:940: in exec_module
???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
/usr/lib/python3/dist-packages/smtbx/refinement/__init__.py:2: in <module>
from cctbx import xray
/usr/lib/python3/dist-packages/cctbx/xray/__init__.py:4: in <module>
from cctbx.xray.scatterer import *
/usr/lib/python3/dist-packages/cctbx/xray/scatterer.py:3: in <module>
import cctbx.eltbx.xray_scattering
/usr/lib/python3/dist-packages/cctbx/eltbx/xray_scattering/__init__.py:2:
in <module>
import scitbx.math.gaussian # base class for gaussian
/usr/lib/python3/dist-packages/scitbx/math/__init__.py:8: in <module>
import scitbx.linalg.eigensystem
/usr/lib/python3/dist-packages/scitbx/linalg/__init__.py:2: in <module>
from scitbx.linalg.ext import *
/usr/lib/python3/dist-packages/scitbx/linalg/ext.py:3: in <module>
bp.import_ext("scitbx_linalg_ext")
/usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in
import_ext
try: mod = __import__(name)
E SystemError: initialization of scitbx_linalg_ext raised unreported
exception
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