Source: python-pauvre Version: 0.2.3-1 Severity: important Tags: ftbfs Dear Maintainer,
python-pauvre fails its build time test suite when built against
biopython 1.80 in experimental but builds successfully against
biopython 1.79. The relevant part of the log in case of failure
shows:
I: pybuild base:240: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build; python3.10 -m unittest
discover -v
test_normal_plotting_scenario
(pauvre.tests.test_synplot.libSeq_test_case)
This verifies that the LibSeq class is constructed with all of the ...
+ export PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build
+ PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build
+ exec python3
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py
synplot --aln_dir
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/alignments/
--fileform pdf --gff_paths
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff
--center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi'
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py",
line 636, in <module>
main()
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py",
line 630, in main
args.func(parser, args)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/pauvre_main.py",
line 62, in run_subtool
import pauvre.synplot as submodule
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pauvre/build/pauvre/synplot.py", line
46, in <module>
import Bio.SubsMat.MatrixInfo as MI
ModuleNotFoundError: No module named 'Bio.SubsMat'
Have a nice day, :)
Étienne.
-- System Information:
Debian Release: bookworm/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.0.0-4-amd64 (SMP w/12 CPU threads; PREEMPT)
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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