Source: emboss
Version: 6.6.0+dfsg-11
Severity: normal
Tags: ftbfs patch
Dear Maintainer,
The emboss package does not currently build on hppa because of a lack
of java support.
The attached patch adds support for the nojava profile and fixes building
on hppa except for the jemboss package which need java.
See for build log:
https://buildd.debian.org/status/fetch.php?pkg=emboss&arch=hppa&ver=6.6.0%2Bdfsg-11&stamp=1665246248&raw=0
Regards,
Dave Anglin
-- System Information:
Debian Release: bookworm/sid
APT prefers buildd-unstable
APT policy: (500, 'buildd-unstable'), (500, 'unstable')
Architecture: hppa (parisc64)
Kernel: Linux 5.19.14+ (SMP w/4 CPU threads)
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
--- control.save 2022-02-18 13:43:27.000000000 +0000
+++ control 2022-10-08 14:29:05.879080150 +0000
@@ -5,7 +5,7 @@
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
-# javahelper,
+# javahelper [!hppa] <!nojava>,
libx11-dev,
x11proto-core-dev,
libgdchart-gd2-xpm-dev,
@@ -19,8 +19,8 @@
sharutils,
tcsh | csh | c-shell,
# Needed until the following is solved:
https://sourceforge.net/tracker/?func=detail&aid=3033326&group_id=93650&atid=605031
- default-jdk,
- ant
+ default-jdk [!hppa] <!nojava>,
+ ant [!hppa] <!nojava>
# #Build-Depends-Indep: default-jdk
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/emboss
@@ -142,6 +142,7 @@
Package: jemboss
Architecture: all
+Build-Profiles: <!nojava>
Depends: ${shlibs:Depends},
${misc:Depends},
emboss,
--- rules.save 2022-10-07 22:14:29.265495688 +0000
+++ rules 2022-10-08 14:35:04.872301169 +0000
@@ -16,6 +16,13 @@
VERSION=$(DEB_VERSION_UPSTREAM)
RENAMED := cons pscan
+# Disable java packages on architecture that don't have
+# an openjdk port.
+nojava_archs = hppa
+ifneq (,$(filter $(DEB_HOST_ARCH), $(nojava_archs)))
+export DEB_BUILD_PROFILES += nojava
+endif
+
EMBOSS-TMP = $(CURDIR)/debian/emboss_tmp
EMBOSS = $(CURDIR)/debian/emboss
EMBOSS-TEST = $(CURDIR)/debian/emboss-test
@@ -25,8 +32,11 @@
CONFFLAGS += --libdir=/usr/lib/emboss/lib
CONFFLAGS += --includedir=/usr/lib/emboss/include
CONFFLAGS += --enable-systemlibs
+
+ifeq ($(filter nojava,$(DEB_BUILD_PROFILES)),)
CONFFLAGS += --with-java=/usr/lib/jvm/default-java/include
CONFFLAGS += --with-javaos=/usr/lib/jvm/default-java/include/linux
+endif
CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
@@ -42,9 +52,11 @@
override_dh_auto_build:
dh_auto_build -- AJAX_FIXED_ROOT=\\\"/usr/share/EMBOSS\\\"
CPPFLAGS="$(CPPFLAGS)" CFLAGS="$(CFLAGS)" LDFLAGS="$(DEB_LDFLAGS)"
+ifeq ($(filter nojava,$(DEB_BUILD_PROFILES)),)
# Add 2 extra files wanted in jemboss.jar
cd jemboss/lib && make jemboss.jar
cd jemboss && jar uf lib/jemboss.jar resources/version
resources/*.properties
+endif
override_dh_clean:
rm -rf debian/emboss_tmp
@@ -88,6 +100,7 @@
### While the next call repeats a statement from install-arch it is
needed to get the
### data dir right into place. Make should be clever enough to not
duplicate the process
$(MAKE) -C emboss install DESTDIR=$(EMBOSS-TMP)
+ifeq ($(filter nojava,$(DEB_BUILD_PROFILES)),)
$(MAKE) -C jemboss install DESTDIR=$(CURDIR)/debian/jemboss
bindir=/usr/bin
# install target seems to remove executable flag which is claimed by
lintian
find debian/jemboss/usr/share/EMBOSS/jemboss/utils -type f -not
-executable -name "*sh" -exec chmod a+x \{\} \;
@@ -95,6 +108,7 @@
rm debian/jemboss/usr/share/EMBOSS/jemboss/LICENSE
# resources.jar not needed as we use the data files in
/usr/share/EMBOSS/data/
rm -f debian/jemboss/usr/share/EMBOSS/jemboss/resources/resources.jar
+endif
### Installation of the test suite
cp -a test debian/emboss-test/usr/share/EMBOSS/
