Source: seqan3 Version: 3.2.0+ds-2 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: [email protected] Usertags: ftbfs-20220917 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alphabet/container/CMakeFiles/container_concept_test.dir/container_concept_test.cpp.o > -MF > alphabet/container/CMakeFiles/container_concept_test.dir/container_concept_test.cpp.o.d > -o > alphabet/container/CMakeFiles/container_concept_test.dir/container_concept_test.cpp.o > -c /<<PKGBUILDDIR>>/test/unit/alphabet/container/container_concept_test.cpp > In file included from /usr/include/c++/12/ios:40, > from /usr/include/c++/12/ostream:38, > from /usr/include/c++/12/bits/unique_ptr.h:41, > from /usr/include/c++/12/memory:76, > from /usr/include/gtest/gtest.h:54, > from > /<<PKGBUILDDIR>>/test/unit/alphabet/container/container_concept_test.cpp:8: > In static member function ‘static constexpr > std::char_traits<char>::char_type* std::char_traits<char>::copy(char_type*, > const char_type*, std::size_t)’, > inlined from ‘static constexpr void std::__cxx11::basic_string<_CharT, > _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = > char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:423:21, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Allocator>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::_M_replace(size_type, size_type, const _CharT*, size_type) [with > _CharT = char; _Traits = std::char_traits<char>; _Alloc = > std::allocator<char>]’ at /usr/include/c++/12/bits/basic_string.tcc:532:22, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::replace(size_type, size_type, const _CharT*, size_type) [with _CharT > = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:2171:19, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::insert(size_type, const _CharT*) [with _CharT = char; _Traits = > std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:1928:22, > inlined from ‘virtual void > container_sequence_container_former_travis_bug_Test::TestBody()’ at > /<<PKGBUILDDIR>>/test/unit/alphabet/container/container_concept_test.cpp:75:13: > /usr/include/c++/12/bits/char_traits.h:431:56: error: ‘void* > __builtin_memcpy(void*, const void*, long unsigned int)’ accessing > 9223372036854775810 or more bytes at offsets 4 and 3 may overlap up to > 9223372036854775813 bytes at offset -3 [-Werror=restrict] > 431 | return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, > __n)); > | > ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ > In static member function ‘static constexpr > std::char_traits<char>::char_type* std::char_traits<char>::copy(char_type*, > const char_type*, std::size_t)’, > inlined from ‘static constexpr void std::__cxx11::basic_string<_CharT, > _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = > char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:423:21, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Allocator>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::_M_replace(size_type, size_type, const _CharT*, size_type) [with > _CharT = char; _Traits = std::char_traits<char>; _Alloc = > std::allocator<char>]’ at /usr/include/c++/12/bits/basic_string.tcc:532:22, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::replace(size_type, size_type, const _CharT*, size_type) [with _CharT > = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:2171:19, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::insert(size_type, const std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = > std::allocator<char>]’ at /usr/include/c++/12/bits/basic_string.h:1858:29, > inlined from ‘virtual void > container_sequence_container_former_travis_bug_Test::TestBody()’ at > /<<PKGBUILDDIR>>/test/unit/alphabet/container/container_concept_test.cpp:79:13: > /usr/include/c++/12/bits/char_traits.h:431:56: error: ‘void* > __builtin_memcpy(void*, const void*, long unsigned int)’ accessing > 9223372036854775810 or more bytes at offsets 8 and 7 may overlap up to > 9223372036854775813 bytes at offset -3 [-Werror=restrict] > 431 | return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, > __n)); > | > ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ > In static member function ‘static constexpr > std::char_traits<char>::char_type* std::char_traits<char>::copy(char_type*, > const char_type*, std::size_t)’, > inlined from ‘static constexpr void std::__cxx11::basic_string<_CharT, > _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = > char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:423:21, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Allocator>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::_M_replace(size_type, size_type, const _CharT*, size_type) [with > _CharT = char; _Traits = std::char_traits<char>; _Alloc = > std::allocator<char>]’ at /usr/include/c++/12/bits/basic_string.tcc:532:22, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::replace(size_type, size_type, const _CharT*, size_type) [with _CharT > = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:2171:19, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::replace(__const_iterator, __const_iterator, const _CharT*, const > _CharT*) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = > std::allocator<char>]’ at /usr/include/c++/12/bits/basic_string.h:2380:22, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::iterator std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with > _InputIterator = const char*; <template-parameter-2-2> = void; _CharT = char; > _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:1798:17, > inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::iterator std::__cxx11::basic_string<_CharT, _Traits, > _Alloc>::insert(const_iterator, std::initializer_list<_Tp>) [with _CharT = > char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]’ at > /usr/include/c++/12/bits/basic_string.h:1830:28, > inlined from ‘virtual void > container_sequence_container_former_travis_bug_Test::TestBody()’ at > /<<PKGBUILDDIR>>/test/unit/alphabet/container/container_concept_test.cpp:136:13: > /usr/include/c++/12/bits/char_traits.h:431:56: error: ‘void* > __builtin_memcpy(void*, const void*, long unsigned int)’ accessing > 9223372036854775810 or more bytes at offsets [2, 9223372036854775807] and 1 > may overlap up to 9223372036854775813 bytes at offset -3 [-Werror=restrict] > 431 | return static_cast<char_type*>(__builtin_memcpy(__s1, __s2, > __n)); > | > ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ > cc1plus: all warnings being treated as errors > [200/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alphabet/composite/CMakeFiles/alphabet_variant_test.dir/alphabet_variant_test.cpp.o > -MF > alphabet/composite/CMakeFiles/alphabet_variant_test.dir/alphabet_variant_test.cpp.o.d > -o > alphabet/composite/CMakeFiles/alphabet_variant_test.dir/alphabet_variant_test.cpp.o > -c /<<PKGBUILDDIR>>/test/unit/alphabet/composite/alphabet_variant_test.cpp > [201/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alignment/pairwise/edit_distance/CMakeFiles/semi_global_edit_distance_unbanded_test.dir/semi_global_edit_distance_unbanded_test.cpp.o > -MF > alignment/pairwise/edit_distance/CMakeFiles/semi_global_edit_distance_unbanded_test.dir/semi_global_edit_distance_unbanded_test.cpp.o.d > -o > alignment/pairwise/edit_distance/CMakeFiles/semi_global_edit_distance_unbanded_test.dir/semi_global_edit_distance_unbanded_test.cpp.o > -c > /<<PKGBUILDDIR>>/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_unbanded_test.cpp > [202/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alphabet/container/CMakeFiles/bitpacked_sequence_test.dir/bitpacked_sequence_test.cpp.o > -MF > alphabet/container/CMakeFiles/bitpacked_sequence_test.dir/bitpacked_sequence_test.cpp.o.d > -o > alphabet/container/CMakeFiles/bitpacked_sequence_test.dir/bitpacked_sequence_test.cpp.o > -c /<<PKGBUILDDIR>>/test/unit/alphabet/container/bitpacked_sequence_test.cpp > [203/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alignment/pairwise/edit_distance/CMakeFiles/global_edit_distance_max_errors_unbanded_test.dir/global_edit_distance_max_errors_unbanded_test.cpp.o > -MF > alignment/pairwise/edit_distance/CMakeFiles/global_edit_distance_max_errors_unbanded_test.dir/global_edit_distance_max_errors_unbanded_test.cpp.o.d > -o > alignment/pairwise/edit_distance/CMakeFiles/global_edit_distance_max_errors_unbanded_test.dir/global_edit_distance_max_errors_unbanded_test.cpp.o > -c > /<<PKGBUILDDIR>>/test/unit/alignment/pairwise/edit_distance/global_edit_distance_max_errors_unbanded_test.cpp > [204/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alphabet/composite/CMakeFiles/composite_integration_test.dir/composite_integration_test.cpp.o > -MF > alphabet/composite/CMakeFiles/composite_integration_test.dir/composite_integration_test.cpp.o.d > -o > alphabet/composite/CMakeFiles/composite_integration_test.dir/composite_integration_test.cpp.o > -c > /<<PKGBUILDDIR>>/test/unit/alphabet/composite/composite_integration_test.cpp > [205/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alphabet/container/CMakeFiles/container_of_container_test.dir/container_of_container_test.cpp.o > -MF > alphabet/container/CMakeFiles/container_of_container_test.dir/container_of_container_test.cpp.o.d > -o > alphabet/container/CMakeFiles/container_of_container_test.dir/container_of_container_test.cpp.o > -c > /<<PKGBUILDDIR>>/test/unit/alphabet/container/container_of_container_test.cpp > [206/624] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 > -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem > /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -isystem > /<<PKGBUILDDIR>>/build_unit/vendor/googletest/googletest/include -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -Wdate-time > -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -Wno-interference-size > -std=c++20 -MD -MT > alignment/pairwise/edit_distance/CMakeFiles/semi_global_edit_distance_max_errors_unbanded_test.dir/semi_global_edit_distance_max_errors_unbanded_test.cpp.o > -MF > alignment/pairwise/edit_distance/CMakeFiles/semi_global_edit_distance_max_errors_unbanded_test.dir/semi_global_edit_distance_max_errors_unbanded_test.cpp.o.d > -o > alignment/pairwise/edit_distance/CMakeFiles/semi_global_edit_distance_max_errors_unbanded_test.dir/semi_global_edit_distance_max_errors_unbanded_test.cpp.o > -c > /<<PKGBUILDDIR>>/test/unit/alignment/pairwise/edit_distance/semi_global_edit_distance_max_errors_unbanded_test.cpp > ninja: build stopped: subcommand failed. > dh_auto_build: error: cd build_unit && LC_ALL=C.UTF-8 ninja -j8 -v returned > exit code 1 > make[1]: *** [debian/rules:42: override_dh_auto_build] Error 25 The full build log is available from: http://qa-logs.debian.net/2022/09/17/seqan3_3.2.0+ds-2_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220917;[email protected] or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220917&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
