Source: ncbi-entrez-direct Version: 14.6.20210224+dfsg-5 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220624 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' edirect.pl > bin/edirect > chmod +x bin/edirect > echo '#!/bin/sh' > bin/eaddress > echo 'exec /usr/bin/edirect -address "$@"' >> bin/eaddress > chmod +x bin/eaddress > echo '#!/bin/sh' > bin/eblast > echo 'exec /usr/bin/edirect -blast "$@"' >> bin/eblast > chmod +x bin/eblast > echo '#!/bin/sh' > bin/ecitmatch > echo 'exec /usr/bin/edirect -citmatch "$@"' >> bin/ecitmatch > chmod +x bin/ecitmatch > echo '#!/bin/sh' > bin/econtact > echo 'exec /usr/bin/edirect -contact "$@"' >> bin/econtact > chmod +x bin/econtact > echo '#!/bin/sh' > bin/enotify > echo 'exec /usr/bin/edirect -notify "$@"' >> bin/enotify > chmod +x bin/enotify > echo '#!/bin/sh' > bin/eproxy > echo 'exec /usr/bin/edirect -proxy "$@"' >> bin/eproxy > chmod +x bin/eproxy > echo '#!/bin/sh' > bin/espell > echo 'exec /usr/bin/edirect -spell "$@"' >> bin/espell > chmod +x bin/espell > echo '#!/bin/sh' > bin/ftp-cp > echo 'exec /usr/bin/edirect -ftpcp "$@"' >> bin/ftp-cp > chmod +x bin/ftp-cp > echo '#!/bin/sh' > bin/ftp-ls > echo 'exec /usr/bin/edirect -ftpls "$@"' >> bin/ftp-ls > chmod +x bin/ftp-ls > sed -e 's,xml2json,/usr/lib/ncbi-entrez-direct/&,; s/python/&3/; /to > precompiled/q' \ > transmute > bin/transmute.sh > echo 'exec /usr/lib/ncbi-entrez-direct/transmute "$@"' >> bin/transmute.sh > chmod +x bin/transmute.sh > sed -e 's,xml2json,/usr/lib/ncbi-entrez-direct/&,; s/python/&3/; /to > precompiled/q' \ > xtract > bin/xtract.sh > echo 'exec /usr/lib/ncbi-entrez-direct/xtract "$@"' >> bin/xtract.sh > chmod +x bin/xtract.sh > mkdir -p bin > sed -e '1s,^#!/bin/sh,#!/bin/bash,' index-extras > bin/index-extras > chmod +x bin/index-extras > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-ncbi-data > bin/download-ncbi-data > chmod +x bin/download-ncbi-data > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-pubmed > bin/download-pubmed > chmod +x bin/download-pubmed > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-sequence > bin/download-sequence > chmod +x bin/download-sequence > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' edirutil > bin/edirutil > chmod +x bin/edirutil > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' run-ncbi-converter > > bin/run-ncbi-converter > chmod +x bin/run-ncbi-converter > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' xml2json > bin/xml2json > chmod +x bin/xml2json > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' efetch > bin/efetch > chmod +x bin/efetch > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' efilter > bin/efilter > chmod +x bin/efilter > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' einfo > bin/einfo > chmod +x bin/einfo > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' elink > bin/elink > chmod +x bin/elink > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' epost > bin/epost > chmod +x bin/epost > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' esearch > bin/esearch > chmod +x bin/esearch > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; > s,"$pth"/ec,/usr/lib/ncbi-entrez-direct/ec,g' esummary > bin/esummary > chmod +x bin/esummary > mkdir -p bin > sed -e 's/edirect\.pl/edirect/g; s/ --no-check-certificate / /' nquire > > bin/nquire > chmod +x bin/nquire > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fatih/ > ln -s /usr/share/gocode/src/github.com/fatih/color > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fatih/color > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/gedex/ > ln -s /usr/share/gocode/src/github.com/gedex/inflector > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/gedex/inflector > make[1]: Circular > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid <- > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid > dependency dropped. > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/ > ln -s /usr/share/gocode/src/github.com/mattn/go-colorable > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/go-colorable > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/ > ln -s /usr/share/gocode/src/github.com/mattn/go-isatty > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/go-isatty > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/pbnjay/ > ln -s /<<PKGBUILDDIR>>/debian/vendor/github.com/pbnjay/memory > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/pbnjay/memory > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/rainycape/ > ln -s /usr/share/gocode/src/github.com/rainycape/unidecode > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/rainycape/unidecode > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/ > ln -s /usr/share/gocode/src/github.com/shirou/gopsutil > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/gopsutil > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/surgebase/ > ln -s /usr/share/gocode/src/github.com/surgebase/porter2 > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/surgebase/porter2 > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/ > ln -s /usr/share/gocode/src/golang.org/x/sys > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/sys > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/ > ln -s /usr/share/gocode/src/golang.org/x/text > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/text > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost > ln -s /usr/share/gocode/src/github.com/klauspost/cpuid/v2 \ > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fiam > ln -s ../rainycape > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fiam/gounidecode > go build -v -gccgoflags '-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro > -Wl,-z,now -Wl,--as-needed' -o bin/rchive rchive.go common.go > obj-x86_64-linux-gnu/src/github.com/pbnjay/memory/memory.go:3:9: cannot find > package "github.com/shirou/gopsutil/mem" in any of: > /usr/lib/go-1.18/src/github.com/shirou/gopsutil/mem (from $GOROOT) > > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/gopsutil/mem > (from $GOPATH) > make[1]: *** [debian/rules:144: bin/rchive] Error 1 The full build log is available from: http://qa-logs.debian.net/2022/06/24/ncbi-entrez-direct_14.6.20210224+dfsg-5_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220624;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220624&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
