Source: capsule-maven-nextflow Version: 1.0.3.1+dfsg-3 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-20220525 ftbfs-bookworm
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules binary > dh binary --buildsystem=gradle --with maven_repo_helper --with javahelper > dh_update_autotools_config -O--buildsystem=gradle > dh_autoreconf -O--buildsystem=gradle > dh_auto_configure -O--buildsystem=gradle > jh_linkjars -O--buildsystem=gradle > dh_auto_build -O--buildsystem=gradle > mkdir -p .gradle/init.d > cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ > gradle --info --console plain --offline --stacktrace --no-daemon > --refresh-dependencies --gradle-user-home .gradle -Duser.home=. > -Duser.name=debian -Ddebian.package=capsule-maven-nextflow > -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar > Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native > To honour the JVM settings for this build a new JVM will be forked. Please > consider using the daemon: > https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. > Starting process 'Gradle build daemon'. Working directory: > /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1 Command: > /usr/lib/jvm/java-11-openjdk-amd64/bin/java > -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar > --add-opens java.base/java.lang=ALL-UNNAMED -Dfile.encoding=UTF-8 > -Duser.country -Duser.language=en -Duser.variant -cp > /usr/share/gradle/lib/gradle-launcher-4.4.1.jar > org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 > Successfully started process 'Gradle build daemon' > An attempt to start the daemon took 0.875 secs. > The client will now receive all logging from the daemon (pid: 1150806). The > daemon log file: /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1/daemon-1150806.out.log > Daemon will be stopped at the end of the build stopping after processing > Closing daemon's stdin at end of input. > The daemon will no longer process any standard input. > Using 8 worker leases. > Creating new cache for fileHashes, path > /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access > org.gradle.cache.internal.DefaultCacheAccess@3740947f > Creating new cache for resourceHashesCache, path > /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, > access org.gradle.cache.internal.DefaultCacheAccess@3740947f > Creating new cache for fileHashes, path > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access > org.gradle.cache.internal.DefaultCacheAccess@ed388aa > Starting Build > Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' > using SubsetScriptTransformer. > Creating new cache for metadata-1.1/results, path > /<<PKGBUILDDIR>>/.gradle/caches/transforms-1/metadata-1.1/results.bin, access > org.gradle.cache.internal.DefaultCacheAccess@b555180 > Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' > using BuildScriptTransformer. > Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using > SubsetScriptTransformer. > Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using > BuildScriptTransformer. > Settings evaluated using settings file '/<<PKGBUILDDIR>>/settings.gradle'. > Projects loaded. Root project using build file > '/<<PKGBUILDDIR>>/build.gradle'. > Included projects: [root project 'capsule-maven'] > Keep-alive timer started > Adding Debian repository to project 'capsule-maven' > Parallel execution is an incubating feature. > Evaluating root project 'capsule-maven' using build file > '/<<PKGBUILDDIR>>/build.gradle'. > Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using > SubsetScriptTransformer. > Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using > BuildScriptTransformer. > Adding Maven pom generation to project 'capsule-maven' > Linking the generated javadoc to the system JDK API documentation > All projects evaluated. > Selected primary task 'jar' from project : > Creating new cache for annotation-processors, path > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileContent/annotation-processors.bin, access > org.gradle.cache.internal.DefaultCacheAccess@6f83f3b4 > Tasks to be executed: [task ':compileJava', task ':processResources', task > ':classes', task ':debianMavenPom', task ':jar'] > Creating new cache for resourceHashesCache, path > /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access > org.gradle.cache.internal.DefaultCacheAccess@ed388aa > Creating new cache for taskHistory, path > /<<PKGBUILDDIR>>/.gradle/4.4.1/taskHistory/taskHistory.bin, access > org.gradle.cache.internal.DefaultCacheAccess@641d275f > Creating new cache for outputFiles, path > /<<PKGBUILDDIR>>/.gradle/buildOutputCleanup/outputFiles.bin, access > org.gradle.cache.internal.DefaultCacheAccess@63a30ae1 > :compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. > :compileJava > Putting task artifact state for task ':compileJava' into context took 0.005 > secs. > Creating new cache for metadata-2.36/module-metadata, path > /<<PKGBUILDDIR>>/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, > access org.gradle.cache.internal.DefaultCacheAccess@448d0d4a > Loading the Maven rules... > Replacing io.nextflow:capsule:jar:1.0.3.1 -> > io.nextflow:capsule:jar:debian > Ignoring org.eclipse.aether:aether-api:jar:1.1.0 > Ignoring org.eclipse.aether:aether-util:jar:1.1.0 > Ignoring org.eclipse.aether:aether-impl:jar:1.1.0 > Replacing org.eclipse.aether:aether-connector-basic:jar:1.1.0 -> > org.apache.maven.resolver:maven-resolver-connector-basic:jar:debian > Passing through org.apache.maven.resolver:maven-resolver:jar:debian > Replacing org.eclipse.aether:aether-transport-file:jar:1.1.0 -> > org.apache.maven.resolver:maven-resolver-transport-file:jar:debian > Replacing org.eclipse.aether:aether-transport-http:jar:1.1.0 -> > org.apache.maven.resolver:maven-resolver-transport-http:jar:debian > Replacing org.apache.maven:maven-aether-provider:jar:3.3.9 -> > org.apache.maven:maven-aether-provider:jar:3.x > org.apache.maven:maven-aether-provider:3.x is relocated to > org.apache.maven:maven-resolver-provider:3.x. Please update your dependencies. > Replacing org.apache.maven:maven-model:jar:3.3.9 -> > org.apache.maven:maven-model:jar:3.x > Passing through org.apache.maven:maven:jar:3.x > Passing through org.apache.maven:maven-parent:jar:debian > Passing through org.apache:apache:jar:debian > Replacing org.apache.maven:maven-settings-builder:jar:3.3.9 -> > org.apache.maven:maven-settings-builder:jar:3.x > Replacing org.codehaus.plexus:plexus-container-default:jar:1.6 -> > org.codehaus.plexus:plexus-container-default:jar:debian > Passing through org.codehaus.plexus:plexus-containers:jar:debian > Ignoring io.takari.aether:takari-local-repository:jar:0.11.2 > Ignoring io.takari:takari-filemanager:jar:0.8.3 > Passing through org.apache.maven.resolver:maven-resolver-api:jar:debian > Passing through org.apache.maven.resolver:maven-resolver-spi:jar:debian > Passing through org.apache.maven.resolver:maven-resolver-util:jar:debian > Passing through org.slf4j:slf4j-api:jar:debian > Passing through org.slf4j:slf4j-parent:jar:debian > Passing through org.apache.httpcomponents:httpclient:jar:debian > Passing through > org.apache.httpcomponents:httpcomponents-client:jar:debian > Passing through org.apache.httpcomponents:httpcore:jar:debian > Passing through org.apache.httpcomponents:httpcomponents-core:jar:debian > Passing through org.slf4j:jcl-over-slf4j:jar:debian > Passing through org.apache.maven:maven-resolver-provider:jar:3.x > Passing through org.codehaus.plexus:plexus-utils:jar:2.x > Passing through org.apache.maven:maven-builder-support:jar:3.x > Passing through javax.inject:javax.inject:jar:debian > Passing through org.codehaus.plexus:plexus-interpolation:jar:debian > Passing through org.apache.maven:maven-settings:jar:3.x > Passing through org.sonatype.plexus:plexus-sec-dispatcher:jar:debian > org.sonatype.plexus:plexus-sec-dispatcher:debian is relocated to > org.codehaus.plexus:plexus-sec-dispatcher:debian. Please update your > dependencies. > Passing through org.codehaus.plexus:plexus-classworlds:jar:debian > Passing through org.apache.xbean:xbean-reflect:jar:debian > Passing through commons-codec:commons-codec:jar:debian > Passing through org.apache.commons:commons-parent:jar:debian > Passing through org.apache.maven:maven-model-builder:jar:3.x > Passing through org.apache.maven:maven-repository-metadata:jar:3.x > Passing through org.apache.maven.resolver:maven-resolver-impl:jar:debian > Passing through org.codehaus.plexus:plexus-sec-dispatcher:jar:debian > Passing through org.apache.maven:maven-artifact:jar:3.x > Passing through org.apache.commons:commons-lang3:jar:debian > Passing through org.codehaus.plexus:plexus-cipher:jar:debian > Up-to-date check for task ':compileJava' took 1.15 secs. It is not up-to-date > because: > No history is available. > All input files are considered out-of-date for incremental task > ':compileJava'. > Compiling with JDK Java compiler API. > /<<PKGBUILDDIR>>/src/main/java/capsule/UserSettings.java:183: error: > exception PlexusCipherException is never thrown in body of corresponding try > statement > } catch (PlexusCipherException e) { > ^ > Note: Some input files use or override a deprecated API. > Note: Recompile with -Xlint:deprecation for details. > Note: Some input files use unchecked or unsafe operations. > Note: Recompile with -Xlint:unchecked for details. > 1 error > :compileJava FAILED > :compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took > 2.121 secs. > > FAILURE: Build failed with an exception. > > * What went wrong: > Execution failed for task ':compileJava'. > > Compilation failed; see the compiler error output for details. > > * Try: > Run with --debug option to get more log output. Run with --scan to get full > insights. > > * Exception is: > org.gradle.api.tasks.TaskExecutionException: Execution failed for task > ':compileJava'. > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:100) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:70) > at > org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTaskExecuter.execute(OutputDirectoryCreatingTaskExecuter.java:51) > at > org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:62) > at > org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) > at > org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) > at > org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) > at > org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) > at > org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) > at > org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) > at > org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) > at > org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) > at > org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) > at > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) > at > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) > at > org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) > at > org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) > at > org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) > at > org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) > at > org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) > at > org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) > at > org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) > Caused by: org.gradle.api.internal.tasks.compile.CompilationFailedException: > Compilation failed; see the compiler error output for details. > at > org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:50) > at > org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:35) > at > org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.delegateAndHandleErrors(NormalizingJavaCompiler.java:98) > at > org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:51) > at > org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:37) > at > org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:35) > at > org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:25) > at > org.gradle.api.tasks.compile.JavaCompile.performCompilation(JavaCompile.java:207) > at > org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:192) > at > org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:124) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) > at > java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) > at > org.gradle.api.internal.project.taskfactory.IncrementalTaskAction.doExecute(IncrementalTaskAction.java:46) > at > org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:39) > at > org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:26) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$1.run(ExecuteActionsTaskExecuter.java:121) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) > at > org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:110) > at > org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:92) > ... 29 more > > > * Get more help at https://help.gradle.org > > BUILD FAILED in 6s > 1 actionable task: 1 executed > dh_auto_build: error: gradle --info --console plain --offline --stacktrace > --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. > -Duser.name=debian -Ddebian.package=capsule-maven-nextflow > -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar returned exit code 1 > make: *** [debian/rules:4: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2022/05/25/capsule-maven-nextflow_1.0.3.1+dfsg-3_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20220525;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20220525&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
