Source: busco Version: 5.3.2-2 Severity: wishlist Hello,
As of 5.3.2-2, busco runs its build time tests during autopkgtest, which is great. In addition, busco uses Debian-provided hmmer and prodigal packages, but build time tests do not cover integration with these tools. Thus it would be great to have an autopkgtest checking that (see #1010568 for discussion). An example of busco call to execute could look like this: $ busco -i $FNA_FILE -l $LINEAGE -o output -m genome --offline There is a couple of FNA files (for $FNA_FILE) given in test_data/ which could be used for autopkgtest. For $LINEAGE, a matching genome should be downloaded from BUSCO database [1] and specified. To have BUSCO lineages in the archive their licensing details have to be clarified as the data does not contain any explicit statements. [1] https://busco-data.ezlab.org/v5/data/lineages/ Andrius
