Source: kallisto Severity: normal Tags: patch User: reproducible-bui...@lists.alioth.debian.org Usertags: buildpath timestamps X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Various files produced related to test suites embed timestamp and build paths into the files, breaking reproducible builds: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/diffoscope-results/kallisto.html It looks like version 0.48.0+dfsg-1 introduced these new files, with the introduction of the snakemake tests. The attached patch fixes this by removing the test suite log files and other test suite metadata in a dh_install override from debian/rules. With this patch applied, kallisto should build reproducibly on tests.reproducible-builds.org! Thanks for maintaining kallisto! live well, vagrant
From 5c5e9ba026cb5acb27cca8ede0ddc41015b879c4 Mon Sep 17 00:00:00 2001 From: Vagrant Cascadian <vagr...@reproducible-builds.org> Date: Wed, 19 Jan 2022 22:58:14 +0000 Subject: [PATCH] debian/rules: Remove various test suite log files and metadata. Various differences including timestamps, timing information, and build paths are embedded in these files, which make it nearly impossible to build the package reproducibly. https://tests.reproducible-builds.org/debian/issues/unstable/test_suite_logs_issue.html --- debian/rules | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/debian/rules b/debian/rules index 23ee80e..3d9a422 100755 --- a/debian/rules +++ b/debian/rules @@ -17,3 +17,10 @@ override_dh_auto_configure: override_dh_auto_test: dh_auto_test cd test && PATH=$$(find ../obj-* -name src):$(PATH) HOME=$$(mktemp --directory) snakemake --cores 1 + +override_dh_install: + dh_install + # Remove test suite logs and other metadata about the test suite + rm -rvf debian/kallisto-examples/usr/share/doc/kallisto/test/.snakemake + rm -vf debian/kallisto-examples/usr/share/doc/kallisto/test/bus_out/run_info.json + rm -vf debian/kallisto-examples/usr/share/doc/kallisto/test/quant_out/run_info.json -- 2.34.1
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