Control: tags -1 upstream
Control: forwarded -1 https://github.com/biod/BioD/issues/55
Hi,
I've reported this issue upstream and keep the upstream developer I know
personally in CC (hi Pjotr ;-) ).
Kind regards
Andreas.
Am Tue, Nov 09, 2021 at 10:27:31PM +0100 schrieb Sebastian Ramacher:
> Source: libbiod
> Version: 0.2.3+git20191120.b8eecef-2
> Severity: serious
> Tags: ftbfs sid bookworm
> Justification: fails to build from source (but built successfully in the past)
>
> libbiod fails to build:
> | ../bio/std/experimental/hts/bam/reader.d(237): Error: no property `cleanup`
> for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(245): Error: no property
> `is_mapped` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(246): Error: no property `refid`
> for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(250): Error: no property `refid`
> for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(254): Error: no property
> `_flag_nc` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(258): Error: no property `_flag`
> for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(267): Error: no property
> `is_mapped` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(268): Error: no property `pos` for
> type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(269): Error: no property `pos` for
> type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(273): Error: no property `pos` for
> type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(280): Error: incompatible types
> for `(this.start_pos()) + (this.consumed_reference_bases())`: `uint` and
> `Nullable!uint`
> | ../bio/std/experimental/hts/bam/reader.d(284): Error: incompatible types
> for `(this.raw_start_pos()) + (this.consumed_reference_bases())`: `uint` and
> `Nullable!uint`
> | ../bio/std/experimental/hts/bam/reader.d(296): Error: no property
> `is_mapped` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(297): Error: no property
> `mapping_quality` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(301): Error: no property `_tlen`
> for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(306): Error: no property
> `sequence_length` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(307): Error: cannot implicitly
> convert expression `this.sequence_length2` of type `Nullable!int` to `uint`
> | ../bio/std/experimental/hts/bam/reader.d(314): Error: no property
> `is_mapped` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(316): Error: no property
> `raw_cigar` for type `std.typecons.Nullable!(ReadBlob)`
> | ../bio/std/experimental/hts/bam/reader.d(335): Error: no property
> `is_mapped` for type `std.typecons.Nullable!(ReadBlob)`
>
> See
> https://buildd.debian.org/status/fetch.php?pkg=libbiod&arch=amd64&ver=0.2.3%2Bgit20191120.b8eecef-2%2Bb4&stamp=1636458777&raw=0
>
> Cheers
> --
> Sebastian Ramacher
>
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