Source: r-bioc-shortread Version: 1.48.0-1 X-Debbugs-CC: debian...@lists.debian.org Severity: serious Tags: bullseye sid User: debian...@lists.debian.org Usertags: needs-update
Hi Maintainer The autopkgtests of r-bioc-shortread are failing in testing and unstable [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-shortread/ Timing stopped at: 0.053 0 0.053 Error in checkIdentical(exp, as(readPrb(sp, ".*prb.txt", as = "FastqEncoding"), : FALSE In addition: Warning messages: 1: In .Internal(vapply(X, FUN, FUN.VALUE, USE.NAMES)) : closing unused connection 6 (/usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt) 2: In .Internal(vapply(X, FUN, FUN.VALUE, USE.NAMES)) : closing unused connection 5 (/usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt) Timing stopped at: 0.032 0 0.032 Error in checkIdentical(36L, unique(width(obj))) : FALSE RUNIT TEST PROTOCOL -- Thu Jan 14 00:29:24 2021 *********************************************** Number of test functions: 104 Number of errors: 0 Number of failures: 2 1 Test Suite : ShortRead RUnit Tests - 104 test functions, 0 errors, 2 failures FAILURE in test_readPrb_consistent: Error in checkIdentical(exp, as(readPrb(sp, ".*prb.txt", as = "FastqEncoding"), : FALSE FAILURE in test_readPrb_input: Error in checkIdentical(36L, unique(width(obj))) : FALSE Test files with failing tests test_readPrb.R test_readPrb_consistent test_readPrb_input Error in BiocGenerics:::testPackage("ShortRead") : unit tests failed for package ShortRead Execution halted autopkgtest [08:29:24]: test run-unit-test: -----------------------] autopkgtest [08:29:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - run-unit-test FAIL non-zero exit status 1
