Source: lambda-align2 Version: 2.0.0-7 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201119 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > cd /<<PKGBUILDDIR>>/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" > -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 > -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 > -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla > -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=4 -s -o > CMakeFiles/lambda2.dir/lambda.cpp.o -c /<<PKGBUILDDIR>>/src/lambda.cpp > In file included from /<<PKGBUILDDIR>>/src/search.hpp:32, > from /<<PKGBUILDDIR>>/src/lambda.cpp:22: > /<<PKGBUILDDIR>>/src/shared_options.hpp:219:21: warning: macro "__DATE__" > might prevent reproducible builds [-Wdate-time] > 219 | setDate(parser, __DATE__); > | ^~~~~~~~ > In file included from /<<PKGBUILDDIR>>/src/shared_misc.hpp:29, > from /<<PKGBUILDDIR>>/src/search.hpp:33, > from /<<PKGBUILDDIR>>/src/lambda.cpp:22: > /usr/include/x86_64-linux-gnu/sys/sysctl.h:21:2: warning: #warning "The > <sys/sysctl.h> header is deprecated and will be removed." [-Wcpp] > 21 | #warning "The <sys/sysctl.h> header is deprecated and will be > removed." > | ^~~~~~~ > In file included from /<<PKGBUILDDIR>>/src/search.hpp:32, > from /<<PKGBUILDDIR>>/src/lambda.cpp:22: > /<<PKGBUILDDIR>>/src/shared_options.hpp:219:21: warning: macro "__DATE__" > might prevent reproducible builds [-Wdate-time] > 219 | setDate(parser, __DATE__); > | ^~~~~~~~ > In file included from /<<PKGBUILDDIR>>/src/shared_misc.hpp:29, > from /<<PKGBUILDDIR>>/src/search.hpp:33, > from /<<PKGBUILDDIR>>/src/lambda.cpp:22: > /usr/include/x86_64-linux-gnu/sys/sysctl.h:21:2: warning: #warning "The > <sys/sysctl.h> header is deprecated and will be removed." [-Wcpp] > 21 | #warning "The <sys/sysctl.h> header is deprecated and will be > removed." > | ^~~~~~~ > In file included from /<<PKGBUILDDIR>>/src/mkindex.hpp:36, > from /<<PKGBUILDDIR>>/src/lambda.cpp:23: > /<<PKGBUILDDIR>>/src/mkindex_misc.hpp: In function ‘void getCwd(TString&) > [with TString = std::__cxx11::basic_string<char>]’: > /<<PKGBUILDDIR>>/src/mkindex_misc.hpp:33:11: warning: ignoring return value > of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 33 | getcwd(cwd, 1000); > | ~~~~~~^~~~~~~~~~~ > In file included from /<<PKGBUILDDIR>>/src/mkindex.hpp:36, > from /<<PKGBUILDDIR>>/src/lambda.cpp:23: > /<<PKGBUILDDIR>>/src/mkindex_misc.hpp: In function ‘void getCwd(TString&) > [with TString = std::__cxx11::basic_string<char>]’: > /<<PKGBUILDDIR>>/src/mkindex_misc.hpp:33:11: warning: ignoring return value > of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ > [-Wunused-result] > 33 | getcwd(cwd, 1000); > | ~~~~~~^~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/lambda.cpp: At global scope: > /<<PKGBUILDDIR>>/src/lambda.cpp:100:1: error: type variant with > ‘TYPE_ALIAS_SET_KNOWN_P’ > 100 | } > | ^ > <vector_type 0x7fc7b7d70498 > type <integer_type 0x7fc7b7c3c498 short int sizes-gimplified asm_written > public type_6 HI > size <integer_cst 0x7fc7b7c3f030 constant 16> > unit-size <integer_cst 0x7fc7b7c3f048 constant 2> > align:16 warn_if_not_align:0 symtab:-1310115248 alias-set 18 > canonical-type 0x7fc7b7c3c498 precision:16 min <integer_cst 0x7fc7b7c1efc0 > -32768> max <integer_cst 0x7fc7b7c3f000 32767> > pointer_to_this <pointer_type 0x7fc7b4d6fdc8> reference_to_this > <reference_type 0x7fc7ae326a80>> > sizes-gimplified asm_written type_6 V8HI > size <integer_cst 0x7fc7b7c1eeb8 type <integer_type 0x7fc7b7c3c0a8 > bitsizetype> constant 128> > unit-size <integer_cst 0x7fc7b7c1eed0 type <integer_type 0x7fc7b7c3c000 > sizetype> constant 16> > align:128 warn_if_not_align:0 symtab:-1425320224 alias-set 18 > canonical-type 0x7fc7b7d70498 nunits:8 > pointer_to_this <pointer_type 0x7fc7a830ebd0> reference_to_this > <reference_type 0x7fc7a713d9d8>> > <vector_type 0x7fc776927c78 > type <integer_type 0x7fc7b7c3c498 short int sizes-gimplified asm_written > public type_6 HI > size <integer_cst 0x7fc7b7c3f030 constant 16> > unit-size <integer_cst 0x7fc7b7c3f048 constant 2> > align:16 warn_if_not_align:0 symtab:-1310115248 alias-set 18 > canonical-type 0x7fc7b7c3c498 precision:16 min <integer_cst 0x7fc7b7c1efc0 > -32768> max <integer_cst 0x7fc7b7c3f000 32767> > pointer_to_this <pointer_type 0x7fc7b4d6fdc8> reference_to_this > <reference_type 0x7fc7ae326a80>> > sizes-gimplified type_6 V8HI > size <integer_cst 0x7fc7b7c1eeb8 type <integer_type 0x7fc7b7c3c0a8 > bitsizetype> constant 128> > unit-size <integer_cst 0x7fc7b7c1eed0 type <integer_type 0x7fc7b7c3c000 > sizetype> constant 16> > align:128 warn_if_not_align:0 symtab:0 alias-set 18 canonical-type > 0x7fc7b7d70498 nunits:8> > during IPA pass: *free_lang_data > /<<PKGBUILDDIR>>/src/lambda.cpp:100:1: internal compiler error: ‘verify_type’ > failed > 0x15039c0 verify_type(tree_node const*) > ../../src/gcc/tree.c:14727 > 0x1506877 free_lang_data > ../../src/gcc/tree.c:6357 > 0x1506877 execute > ../../src/gcc/tree.c:6402 > Please submit a full bug report, > with preprocessed source if appropriate. > Please include the complete backtrace with any bug report. > See <file:///usr/share/doc/gcc-10/README.Bugs> for instructions. > [ 33%] Linking CXX executable ../bin/lambda2 > cd /<<PKGBUILDDIR>>/build/src && /usr/bin/cmake -E cmake_link_script > CMakeFiles/lambda2.dir/link.txt --verbose=1 > /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG > -flto=4 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread > -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o > ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread > The bug is not reproducible, so it is likely a hardware or OS problem. > make[3]: *** [src/CMakeFiles/lambda2-sse4.dir/build.make:85: > src/CMakeFiles/lambda2-sse4.dir/lambda.cpp.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/11/19/lambda-align2_2.0.0-7_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
