No, it did not happen again, at least not to me (and I've since upgraded to buster and Xen 4.11), and if no one else has run into it either it's probably not worth continued attention. In particular, it's unlikely to have been a regression triggered by the +deb9u11 security update.
- Bug#919460: Bug#919460: xen: disk I/O problems on stretch... Diederik de Haas
- Bug#919460: Bug#919460: xen: disk I/O problems on st... Sergio Gelato
- Bug#919460: Bug#919460: xen: disk I/O problems o... Diederik de Haas