Source: r-cran-shinystan Version: 2.5.0-3 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression
Hi Maintainer Since the removal of r-cran-rstanarm from testing on 2020-07-22, r-cran-shinystan's autopkgtests have been failing there [1]. However, r-cran-shinystan's tests currently also fail in unstable [2], where r-cran-rstanarm is still available. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-cran-shinystan/testing/amd64/ [2] https://ci.debian.net/packages/r/r-cran-shinystan/unstable/amd64/ > library(testthat) > library(shinystan) Loading required package: shiny code for methods in class “Rcpp_model_base” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Rcpp_model_base” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Rcpp_stan_fit” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Rcpp_stan_fit” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) This is shinystan version 2.5.0 > > test_check("shinystan") *** caught segfault *** address 0x7f883b78e008, cause 'invalid permissions' Traceback: 1: dyn.load(file, DLLpath = DLLpath, ...) 2: library.dynam(lib, package, package.lib) 3: loadNamespace(package, lib.loc) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 8: library(rstanarm) 9: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 10: suppressPackageStartupMessages(library(rstanarm)) 11: eval(code, test_env) 12: eval(code, test_env) 13: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 14: doTryCatch(return(expr), name, parentenv, handler) 15: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 21: test_code(NULL, exprs, env) 22: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) 23: force(code) 24: doWithOneRestart(return(expr), restart) 25: withOneRestart(expr, restarts[[1L]]) 26: withRestarts(testthat_abort_reporter = function() NULL, force(code)) 27: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { reporter$start_file(basename(path)) lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) reporter$.end_context() reporter$end_file() }) 28: FUN(X[[i]], ...) 29: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap) 30: force(code) 31: doWithOneRestart(return(expr), restart) 32: withOneRestart(expr, restarts[[1L]]) 33: withRestarts(testthat_abort_reporter = function() NULL, force(code)) 34: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)) 35: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap) 36: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap) 37: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap) 38: test_check("shinystan") An irrecoverable exception occurred. R is aborting now ... Segmentation fault autopkgtest [16:04:30]: test run-unit-test: -----------------------] autopkgtest [16:04:30]: test run-unit-test: - - - -
